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RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_1138

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_1138_trna_2
unknown

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comp(19..108)
-----------------
DNA (90bp)
transferRNA
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_1138_trna_1
unknown

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comp(226..311)
-----------------
DNA (86bp)
transferRNA
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_1138_1
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(398..1573)
-----------------
DNA (1176bp)
protein (392aa)
seryl-tRNA synthetase (EC:6.1.1.11); K01875 seryl-tRNA synthetase [EC:6.1.1.11] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
seryl-tRNA synthetase (EC:6.1.1.11)
seryl-tRNA synthase n=1 Tax=Alicyclobacillus pohliae RepID=UPI000369BF40
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_1138_2
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1759..2124)
-----------------
DNA (366bp)
protein (122aa)
UPF0102 protein DaAHT2_1166 n=1 Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z2T9_DESAT
hypothetical protein; K07460 putative endonuclease Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
hypothetical protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_1138_3
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2127..2846)
-----------------
DNA (720bp)
protein (240aa)
RnhB; ribonuclease HII; K03470 ribonuclease HII [EC:3.1.26.4] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
rnhB; ribonuclease HII (EC:3.1.26.4)
ribonuclease HII n=1 Tax=Desulfospira joergensenii RepID=UPI0003B339BE
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_1138_4
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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3020..3307
-----------------
DNA (288bp)
protein (96aa)
glutamyl-tRNA(Gln) amidotransferase subunit C; K02435 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=GATC_GEODF
glutamyl-tRNA(Gln) amidotransferase subunit C
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_1138_5
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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3304..4761
-----------------
DNA (1458bp)
protein (486aa)
gatA; glutamyl-tRNA(Gln) amidotransferase subunit A (Glu-ADT subunit A) (EC:6.3.5.-) Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
gatA; glutamyl-tRNA(Gln) amidotransferase subunit A (Glu-ADT subunit A) (EC:6.3.5.-)
Glutamyl-tRNA(Gln) amidotransferase subunit A id=1841899 bin=GWD2_Nitrospirae-related_57_8 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_1138_6
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4881..6323
-----------------
DNA (1443bp)
protein (481aa)
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B; K02434 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curat
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B id=1703035 bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_1138_7
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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6345..6731
-----------------
DNA (387bp)
protein (129aa)
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B; K02434 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curat
hypothetical protein VspiD_18055 id=2626009 bin=GWF2_Bacteroidetes_41_9 species=Fulvivirga imtechensis genus=Fulvivirga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_9 organism_group=Bacteroidetes
S23 ribosomal protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_1138_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(6799..8409)
-----------------
DNA (1611bp)
protein (537aa)
Exported protein id=3634141 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_1138_9
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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8535..8816
-----------------
DNA (282bp)
protein (94aa)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
Displaying 11 items

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