ggKbase home page

RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_3995

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_3995_1
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..632
DNA (630bp) protein (210aa)
RNA methyl transferase TrmH; K02533 tRNA/rRNA methyltransferase [EC:2.1.1.-] Tax=GWD2_Deltaproteobacteria_55_8_curated
RNA methyltransferase, TrmH family, group 1 id=2001112 bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
RNA methyltransferase
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_3995_2
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

644..1162
DNA (519bp) protein (173aa)
Acetyl-CoA carboxylase id=2001115 bin=GWD2_Deltaproteobacteria_55_8 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein; K02160 acetyl-CoA carboxylase biotin carboxyl carrier protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_3995_3
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1169..2542
DNA (1374bp) protein (458aa)
pyruvate carboxylase; K01961 acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
pyruvate carboxylase (EC:6.4.1.1)
Acetyl-CoA carboxylase id=2001119 bin=GWD2_Deltaproteobacteria_55_8 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_3995_4
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2563..4023
DNA (1461bp) protein (487aa)
pyruvate carboxylase (EC:6.4.1.1)
pyruvate carboxylase Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
Oxaloacetate decarboxylase id=2113537 bin=GWD2_Deltaproteobacteria_55_8 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_3995_5
unknown

Not on your lists

comp(4042..4560)
DNA (519bp) protein (173aa)

This feature has no annotations

RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_3995_6
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4824..4958
DNA (135bp) protein (45aa)
amidohydrolase n=1 Tax=Agromyces italicus RepID=UPI0003B54D0B
amidohydrolase family protein; K07045 Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_3995_7
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5026..5994
DNA (969bp) protein (323aa)
nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
Putative uncharacterized protein id=1803219 bin=GWD2_Deltaproteobacteria_55_8 species=Synechococcus sp. PCC 7502 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_3995_8
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6106..7239
DNA (1134bp) protein (378aa)
UPI0003D01A8F related cluster n=1 Tax=unknown RepID=UPI0003D01A8F
hypothetical protein Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
hypothetical protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_3995_9
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7240..7524
DNA (285bp) protein (95aa)
id=2016262 Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
id=2016262 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_3995_10
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7560..7856)
DNA (297bp) protein (99aa)
hypothetical protein Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
Putative uncharacterized protein id=4996879 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_3995_11
unknown

Not on your lists

7998..8138
DNA (141bp) protein (47aa)

This feature has no annotations

RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_3995_12
CG_Dehalo_02, Dehalococcoidia, Chloroflexi, Bacteria

Not on your lists

comp(8506..8712)
DNA (207bp) protein (69aa)
hypothetical protein, partial n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=UPI0001C2B13E
PilT protein domain-containing protein Tax=CG_Dehalo_02
Displaying 12 items

View Taxonomy