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RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_300

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_300_1
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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3..470
DNA (468bp) protein (156aa)
Oligopeptide ABC transporter membrane protein id=1880798 bin=GWD2_Deltaproteobacteria_55_8 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
binding-protein-dependent transporters inner membrane component; K15582 oligopeptide transport system permease protein Tax=GWD2_Deltaproteobacteria_55_8_curated
oppC; oligopeptide transporter subunit ; membrane component of ABC superfamily
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_300_2
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(491..1399)
DNA (909bp) protein (303aa)
Putative uncharacterized protein id=1880800 bin=GWD2_Deltaproteobacteria_55_8 species=uncultured archaeon genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
RecA-superfamily ATPase; K08482 circadian clock protein KaiC Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
RecA-superfamily ATPase
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_300_3
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1766..2173
DNA (408bp) protein (136aa)
Bll7553 protein id=1880802 bin=GWD2_Deltaproteobacteria_55_8 species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein Tax=GWD2_Deltaproteobacteria_55_8_curated
hypothetical protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_300_4
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2326..3504
DNA (1179bp) protein (393aa)
Molybdopterin biosynthesis protein id=1880804 bin=GWD2_Deltaproteobacteria_55_8 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
molybdopterin biosynthesis protein MoeB Tax=GWD2_Deltaproteobacteria_55_8_curated
molybdopterin biosynthesis protein MoeB
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_300_5
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3542..4264)
DNA (723bp) protein (241aa)
pseudouridine synthase; K06178 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] Tax=GWD2_Deltaproteobacteria_55_8_curated
Pseudouridine synthase id=1880806 bin=GWD2_Deltaproteobacteria_55_8 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
pseudouridine synthase
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_300_6
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4345..4914)
DNA (570bp) protein (190aa)
Chromosome segregation and condensation protein, ScpB id=1880848 bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
condensin subunit ScpB; K06024 segregation and condensation protein B Tax=GWD2_Deltaproteobacteria_55_8_curated
scpB; chromosome segregation and condensation protein ScpB
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_300_7
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4904..5674)
DNA (771bp) protein (257aa)
scpA; segregation and condensation protein A; K05896 segregation and condensation protein A Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
Segregation and condensation protein A id=1880852 bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
scpA; segregation and condensation protein A
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_300_8
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5776..6753)
DNA (978bp) protein (326aa)
tryptophanyl-tRNA synthetase; K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2] Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
Tryptophan--tRNA ligase id=1880708 bin=GWD2_Deltaproteobacteria_55_8 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
tryptophanyl-tRNA synthetase
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_300_9
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6765..7436)
DNA (672bp) protein (224aa)
Peptidase M50 id=1880709 bin=GWD2_Deltaproteobacteria_55_8 species=Mariprofundus ferrooxydans genus=Mariprofundus taxon_order=Mariprofundales taxon_class=Zetaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
peptidase M50 Tax=GWD2_Deltaproteobacteria_55_8_curated
putative metalloprotease
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_300_10
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7534..8406)
DNA (873bp) protein (291aa)
Integrase/recombinase id=1880710 bin=GWD2_Deltaproteobacteria_55_8 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
integrase/recombinase; K04763 integrase/recombinase XerD Tax=GWD2_Deltaproteobacteria_55_8_curated
integrase/recombinase
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_300_11
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8438..11134)
DNA (2697bp) protein (899aa)
UTP-GlnB uridylyltransferase, GlnD (EC:2.7.7.59); K00990 [protein-PII] uridylyltransferase [EC:2.7.7.59] Tax=GWD2_Deltaproteobacteria_55_8_curated
UTP-GlnB uridylyltransferase, GlnD (EC:2.7.7.59)
uridylyltransferase id=1880711 bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_300_12
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11147..12817)
DNA (1671bp) protein (557aa)
N-acetylmuramoyl-L-alanine amidase; K01448 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
N-acetylmuramyl-L-alanine amidase id=1880712 bin=GWD2_Deltaproteobacteria_55_8 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
N-acetylmuramyl-L-alanine amidase
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_300_13
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12817..15414)
DNA (2598bp) protein (866aa)
DNA mismatch repair protein MutS id=1880713 bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
mutS; DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
mutS-1; DNA mismatch repair protein MutS
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_300_14
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15420..15893)
DNA (474bp) protein (158aa)
MerR family transcriptional regulator Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
Putative transcriptional regulator, MerR family id=4263457 bin=GWC2_Proteo_65_14_Ab886 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
transcriptional regulator
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_300_15
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16280..17149
DNA (870bp) protein (290aa)
nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component id=2153500 bin=GWD2_Deltaproteobacteria_55_8 species=Synechococcus sp. PCC 7502 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ABC transporter substrate-binding protein
Displaying 15 items

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