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RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_147

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_147_1
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..278)
DNA (276bp) protein (92aa)
hypothetical protein Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
Putative uncharacterized protein id=1985269 bin=GWD2_Deltaproteobacteria_55_8 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_147_2
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(472..861)
DNA (390bp) protein (130aa)
hypothetical protein Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
Tfp pilus assembly protein, major pilin id=2028182 bin=GWD2_Deltaproteobacteria_55_8 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_147_3
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1211..3253)
DNA (2043bp) protein (681aa)
two component sigma-54 specific Fis family transcriptional regulator; K02667 two-component system, NtrC family, response regulator PilR Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
pilR; regulator protein pilR; K02667 two-component system, NtrC family, response regulator PilR id=15192357 bin=GWC2_NOV_55_46 species=Bdellovibrio bacteriovorus genus=Bdellovibrio taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_NOV_55_46 organism_group=Proteobacteria
pilR; sigma-54-dependent transcriptional response regulator PilR
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_147_4
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3305..4525)
DNA (1221bp) protein (407aa)
type II secretion system protein; K02653 type IV pilus assembly protein PilC Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
pilus assembly protein PilC
Type IV pilus inner membrane protein PilC id=4282417 bin=GWC2_Deltaproteobacteria_42_51 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_147_5
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4630..6357)
DNA (1728bp) protein (576aa)
type IV pilus biogenesis protein PilB; K02652 type IV pilus assembly protein PilB Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
Type IV-A pilus assembly ATPase PilB id=2008269 bin=GWB2_Proteobacteria_55_19 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
type II secretion system protein E
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_147_6
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6626..9346)
DNA (2721bp) protein (907aa)
ppdK; pyruvate, phosphate dikinase; K01006 pyruvate,orthophosphate dikinase [EC:2.7.9.1] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
Pyruvate phosphate dikinase id=1998691 bin=GWD2_Deltaproteobacteria_55_8 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ppdK; pyruvate, phosphate dikinase
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_147_7
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9406..10173)
DNA (768bp) protein (256aa)
DNA repair protein RecO id=1998689 bin=GWD2_Deltaproteobacteria_55_8 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
DNA repair protein; K03584 DNA repair protein RecO (recombination protein O) Tax=GWD2_Deltaproteobacteria_55_8_curated
DNA repair protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_147_8
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10329..10955
DNA (627bp) protein (209aa)
Protein GrpE id=1998687 bin=GWD2_Deltaproteobacteria_55_8 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
grpE; heat shock protein nucleotide exchange factor GrpE; K03687 molecular chaperone GrpE Tax=GWD2_Deltaproteobacteria_55_8_curated
heat shock protein GrpE
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_147_9
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11003..12931
DNA (1929bp) protein (643aa)
dnaK; molecular chaperone DnaK; K04043 molecular chaperone DnaK Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
Chaperone protein DnaK id=1998685 bin=GWD2_Deltaproteobacteria_55_8 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
dnaK; molecular chaperone DnaK
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_147_10
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13048..14160
DNA (1113bp) protein (371aa)
dnaJ; chaperone protein DnaJ; K03686 molecular chaperone DnaJ Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
Chaperone protein DnaJ id=4583521 bin=GWC2_Pelobacter_58_13 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
molecular chaperone DnaJ
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_147_11
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14303..16798
DNA (2496bp) protein (832aa)
loN-3; ATP-dependent protease La (EC:3.4.21.53); K01338 ATP-dependent Lon protease [EC:3.4.21.53] Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
Lon protease id=4131294 bin=GWC2_Proteo_65_14_Ab886 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
lon-3; ATP-dependent Lon protease (La)
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_147_12
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16799..17791
DNA (993bp) protein (331aa)
thiamine-monophosphate kinase; K00946 thiamine-monophosphate kinase [EC:2.7.4.16] Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
Thiamine-monophosphate kinase id=1946132 bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
thiL; thiamin monophosphate kinase
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_147_13
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17859..18608
DNA (750bp) protein (250aa)
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase id=1946134 bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; K06898 Tax=GWD2_Deltaproteobacteria_55_8_curated
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_147_14
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18659..18934
DNA (276bp) protein (92aa)
id=1946136 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
id=1946136 Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_147_15
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18927..19352
DNA (426bp) protein (142aa)
Protein archease id=1946137 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Dictyoglomus taxon_order=Dictyoglomales taxon_class=Dictyoglomia phylum=Dictyoglomi tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
hypothetical protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_147_16
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19358..20761
DNA (1404bp) protein (468aa)
Putative uncharacterized protein id=1946139 bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein Tax=GWD2_Deltaproteobacteria_55_8_curated
hypothetical protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_147_17
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20826..21872
DNA (1047bp) protein (349aa)
arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase (EC:2.6.1.-) Tax=GWD2_Deltaproteobacteria_55_8_curated
DegT/DnrJ/EryC1/StrS aminotransferase id=1946141 bin=GWD2_Deltaproteobacteria_55_8 species=Aminomonas paucivorans genus=Aminomonas taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
putative PLP-dependent enzyme possibly involved in cell wall biogenesis
Displaying 17 items

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