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RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_2054

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_2054_1
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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533..898
-----------------
DNA (366bp)
protein (122aa)
30S ribosomal protein S24 n=2 Tax=Schlesneria paludicola RepID=UPI00029B1BED
S23 ribosomal protein Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
S23 ribosomal protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_2054_2
unknown

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comp(892..1134)
-----------------
DNA (243bp)
protein (81aa)

This feature has no annotations

RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_2054_trna_1
unknown

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comp(1134..1207)
-----------------
DNA (74bp)
transferRNA
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_2054_3
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1293..1676)
-----------------
DNA (384bp)
protein (128aa)
RNA polymerase sigma factor id=1890656 bin=GWD2_Deltaproteobacteria_55_8 species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
rpoD; RNA polymerase sigma factor rpod; K03086 RNA polymerase primary sigma factor Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
RpoD family RNA polymerase sigma-70 subunit
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_2054_4
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1657..2964)
-----------------
DNA (1308bp)
protein (436aa)
RNA polymerase sigma factor id=1890656 bin=GWD2_Deltaproteobacteria_55_8 species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
rpoD; RNA polymerase sigma factor rpod; K03086 RNA polymerase primary sigma factor Tax=GWD2_Deltaproteobacteria_55_8_curated
RpoD subfamily RNA polymerase sigma-70 subunit
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_2054_5
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3087..4889)
-----------------
DNA (1803bp)
protein (601aa)
DNA primase; K02316 DNA primase [EC:2.7.7.-] Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
DNA primase id=1890659 bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
DNA primase
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_2054_6
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4946..5479)
-----------------
DNA (534bp)
protein (178aa)
Membrane protein implicated in colicin V production id=1890671 bin=GWD2_Deltaproteobacteria_55_8 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
cvpA; CvpA family protein; K03558 membrane protein required for colicin V production Tax=GWD2_Deltaproteobacteria_55_8_curated
membrane protein implicated in colicin V production
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_2054_7
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(5547..5993)
-----------------
DNA (447bp)
protein (149aa)
Uncharacterized protein YqeY id=1890672 bin=GWD2_Deltaproteobacteria_55_8 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein; K09117 hypothetical protein Tax=GWD2_Deltaproteobacteria_55_8_curated
yqeY; hypothetical protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_2054_8
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6014..6211)
-----------------
DNA (198bp)
protein (66aa)
30S ribosomal protein S21 id=1890673 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
rpsU; 30S ribosomal protein S21 Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
rpsU; 30S ribosomal protein S21
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_2054_9
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6471..7205)
-----------------
DNA (735bp)
protein (245aa)
UgpQ; glycerophosphoryl diester phosphodiesterase; K01126 glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] Tax=GWD2_Deltaproteobacteria_55_8_curated
Glycerophosphoryl diester phosphodiesterase family protein id=1890674 bin=GWD2_Deltaproteobacteria_55_8 species=Caldanaerobacter subterraneus genus=Caldanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
UgpQ; glycerophosphoryl diester phosphodiesterase
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_2054_10
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(7239..8252)
-----------------
DNA (1014bp)
protein (338aa)
threonine synthase (EC:4.2.3.1); K01733 threonine synthase [EC:4.2.3.1] Tax=GWD2_Deltaproteobacteria_55_8_curated
threonine synthase (EC:4.2.3.1)
L-threonine synthase id=1890677 bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Displaying 11 items

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