ggKbase home page

RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_88

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_88_1
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1088)
DNA (1086bp) protein (362aa)
enoyl-CoA hydratase n=1 Tax=Microbulbifer agarilyticus RepID=UPI000255ACB5
enoyL-CoA hydratase/isomerase Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
enoyl-CoA hydratase/isomerase family protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_88_2
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1097..1864)
DNA (768bp) protein (256aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3DB7
hypothetical protein; K06966 Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
hypothetical protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_88_3
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2011..2322)
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NN09_9DELT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
hypothetical protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_88_4

Not on your lists

comp(2350..3138)
DNA (789bp) protein (263aa)
Uncharacterized protein n=4 Tax=Ralstonia RepID=B2UCJ1_RALPJ
Marine sediment metagenome DNA, contig: S03H2_S15128 {ECO:0000313|EMBL:GAH62272.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
hypothetical protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_88_5
RBG_19FT_COMBO_Planctomycetes_48_8_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(3083..4072)
DNA (990bp) protein (330aa)
hypothetical protein n=1 Tax=Methylomonas sp. MK1 RepID=UPI000365DD3E
hypothetical protein, putative phage gene Tax=RBG_19FT_COMBO_Planctomycetes_48_8_curated
hypothetical protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_88_6
unknown

Not on your lists

comp(4089..4241)
DNA (153bp) protein (51aa)

This feature has no annotations

RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_88_7
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(4241..4531)
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKD7_9BACT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_88_8
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4541..4801)
DNA (261bp) protein (87aa)
Prevent-host-death protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKD8_9BACT
prevent-host-death protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
prevent-host-death protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_88_9
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4865..9196)
DNA (4332bp) protein (1444aa)
von Willebrand factor type A id=1940281 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Rhodopirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
chloride channel Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
chloride channel
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_88_10
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9199..10092)
DNA (894bp) protein (298aa)
von Willebrand factor type A id=1940279 bin=GWD2_Deltaproteobacteria_55_8 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
von Willebrand factor type A Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
von Willebrand factor type A
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_88_11
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10095..11093)
DNA (999bp) protein (333aa)
ATPase associated with various cellular activities AAA_3 id=1940277 bin=GWD2_Deltaproteobacteria_55_8 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
MoxR-like ATPase Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
ATPase
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_88_12
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11096..12532)
DNA (1437bp) protein (479aa)
hypothetical protein n=1 Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B3A2D2
hypothetical protein Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_88_13
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12529..13275)
DNA (747bp) protein (249aa)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_88_14
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13265..15220)
DNA (1956bp) protein (652aa)
hypothetical protein Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
hypothetical protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_88_15
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15261..15749)
DNA (489bp) protein (163aa)
Transcription elongation factor GreA n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JEE5_HYPSM
greA; transcription elongation factor (transcript cleavage factor); K03624 transcription elongation factor GreA Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
greA; transcription elongation factor (transcript cleavage factor)
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_88_16
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15962..16951)
DNA (990bp) protein (330aa)
Oligopeptide/dipeptide ABC transporter, ATPase subunit n=1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=B8D225_HALOH
oligopeptide/dipeptide ABC transporter ATPase; K02032 peptide/nickel transport system ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
oligopeptide/dipeptide ABC transporter ATPase
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_88_17
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17031..17996)
DNA (966bp) protein (322aa)
peptide ABC transporter ATPase (EC:3.6.3.24); K02031 peptide/nickel transport system ATP-binding protein Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
Oligopeptide ABC transporter ATP-binding protein id=3907802 bin=GWB1_Deltaproteobacteria_rel_55_8 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_Deltaproteobacteria_rel_55_8 organism_group=Deltaproteobacteria organism_desc=Good
oligopeptide ABC transporter ATP-binding protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_88_18
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18056..18898)
DNA (843bp) protein (281aa)
Peptide ABC transporter, membrane protein n=2 Tax=Geobacter metallireducens RepID=Q39WA2_GEOMG
binding-protein dependent transport system inner membrane protein; K02034 peptide/nickel transport system permease protein Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
peptide ABC transporter membrane protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_88_19
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18895..19878)
DNA (984bp) protein (328aa)
ABC-type transporter, integral membrane subunit n=1 Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NHM9_DESAR
ABC transporter permease; K02033 peptide/nickel transport system permease protein Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
ABC transporter permease
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_88_20
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19969..21678)
DNA (1710bp) protein (570aa)
oligopeptide-binding protein; K02035 peptide/nickel transport system substrate-binding protein Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
Oligopeptide-binding protein id=4920273 bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
oligopeptide-binding protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_88_21
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21685..22515)
DNA (831bp) protein (277aa)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_88_22
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22512..24257)
DNA (1746bp) protein (582aa)
hypothetical protein Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
Tetratricopeptide repeat family protein id=3853144 bin=GWC2_Deltaproteobacteria_42_51 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
TPR repeat-containing protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_88_23
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24331..26358
DNA (2028bp) protein (676aa)
ligA; NAD-dependent DNA ligase; K01972 DNA ligase (NAD+) [EC:6.5.1.2] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
DNA ligase n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SJT6_9BACT
ligA; NAD-dependent DNA ligase
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_88_24
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26359..26664)
DNA (306bp) protein (102aa)
Putative RNA-binding protein RbpA n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PIC8_9BACT
similar to cp31AHv protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
putative RNA-binding protein RbpA
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_88_25
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26891..27145
DNA (255bp) protein (85aa)
acylphosphatase; K01512 acylphosphatase [EC:3.6.1.7] Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
acylphosphatase
Acylphosphatase id=4188231 bin=GWC2_Nitrospirae-rel_56_14 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_88_26
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27135..27986)
DNA (852bp) protein (284aa)
methyltransferase; K07056 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Geobacter sp. (strain M18) RepID=E8WRZ1_GEOS8
uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_88_27
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28284..29105)
DNA (822bp) protein (274aa)
nadE; NAD+ synthetase; K01916 NAD+ synthase [EC:6.3.1.5] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
NH(3)-dependent NAD(+) synthetase n=2 Tax=Geobacter metallireducens RepID=Q39RP4_GEOMG
nadE; NAD synthetase
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_88_28
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29203..29400)
DNA (198bp) protein (66aa)
nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
Displaying 28 items

View Taxonomy