ggKbase home page

RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_610_1

Organism: Deltaproteobacteria bacterium RIFCSPLOWO2_02_56_12

near complete RP 49 / 55 MC: 2 BSCG 47 / 51 ASCG 12 / 38 MC: 2
Location: 3..866

Top 3 Functional Annotations

Value Algorithm Source
ribosomal large subunit pseudouridine synthase C; K06179 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 73.5
  • Coverage: 279.0
  • Bit_score: 424
  • Evalue 1.40e-115
RluA family pseudouridine synthase (EC:3.2.1.17); K06179 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] id=5094379 bin=PER_GWF2_33_10 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=PER_GWF2_33_10 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome similarity UNIREF
DB: UNIREF100
  • Identity: 40.3
  • Coverage: 288.0
  • Bit_score: 222
  • Evalue 7.70e-55
RluA family pseudouridine synthase (EC:3.2.1.17) similarity KEGG
DB: KEGG
  • Identity: 40.2
  • Coverage: 286.0
  • Bit_score: 191
  • Evalue 4.10e-46

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RLO_Deltaproteobacteria_60_16 → Deltaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 864
CCCAAGAGGCTCGAGAACTTCCTCAAAAAGCGCTTCCCCATCGGTTACATCAGGAAGCTTTTCCGCAAGAACGGCGTCCGCTTAAACGGCAAACGCTGCCGAGTAAACGATACCGCCCGGCCAGGGGATCGCGTTACGCTCTTTATTCCCTTTGAAAGACAACCGAGCAAGTCCGCGAAGCCGGCCGCTCCAGAGCGCGGATTTGAGATTCTATTCGAAGATGACGATATTTTGGTCATCAACAAACAAGCGGGCCTGGCGGTTCACGAGGGCAAAGAGATCCTCAAGAGTCAATCCCTGCTAGGGATGCTGGAAGCGACCTACCGTTCCCAGGGCATCCTCCCAAGACTGGTCCACAGGATTGACAAAGAGACCTCGGGTATTCTGGTCGTCGCCAAAAGGGAGGCGGTAGCTGAGGACTTAGAGAAGAGATTTGAGAAGGGAGAGGTGGAAAAGGAGTATCTTGCCCTGGTGCTGGGAAGGGTCCATCCGAAGGAAGGGAGCATCGATTTTCCCATCCCGGGACGTGAGGGAAAGCCCTCCCCGGCCCTGACCCGTTACCGGGTTGAGAGAGAGTTGCCCGGGACAAGCCTCGTTCGCGTGAATATGGAAACCGGCAGAATGCACCAAATCCGTCTCCATTTCGCCAGGCTTGGCCATCCGGTGGTAATGGACGACAGGCACGGGGATTTCGCTTTTAACAAGCAATTCCGCAAAACGCATGGCTTAAAGCGCCAGTTCCTCCATGCCTGCACTATTTCCTTTGAGCACCGAGGAAAGAAGCGGACATGGAATGCGCCCCCGCCCGACGATCTGACCAGGACCCTCCAATCGCTAGAGTCCATTGTCCTAACCGGACTCTGA
PROTEIN sequence
Length: 288
PKRLENFLKKRFPIGYIRKLFRKNGVRLNGKRCRVNDTARPGDRVTLFIPFERQPSKSAKPAAPERGFEILFEDDDILVINKQAGLAVHEGKEILKSQSLLGMLEATYRSQGILPRLVHRIDKETSGILVVAKREAVAEDLEKRFEKGEVEKEYLALVLGRVHPKEGSIDFPIPGREGKPSPALTRYRVERELPGTSLVRVNMETGRMHQIRLHFARLGHPVVMDDRHGDFAFNKQFRKTHGLKRQFLHACTISFEHRGKKRTWNAPPPDDLTRTLQSLESIVLTGL*