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RIFCSPLOWO2_02_DPX4_39_17_rifcsplowo2_02_sub10_scaffold_187

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Displaying items 1-30 of 42 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_02_DPX4_39_17_rifcsplowo2_02_sub10_scaffold_187_1
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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74..1681
DNA (1608bp) protein (536aa)
lnt; apolipoprotein N-acyltransferase; K03820 apolipoprotein N-acyltransferase [EC:2.3.1.-] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Apolipoprotein N-acyltransferase id=4478686 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
lnt; apolipoprotein N-acyltransferase
RIFCSPLOWO2_02_DPX4_39_17_rifcsplowo2_02_sub10_scaffold_187_2
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

1726..2649
DNA (924bp) protein (308aa)
Cobalamin (Vitamin B12) biosynthesis CbiM protein n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UPQ7_ROSS1
cobalamin (vitamin B12) biosynthesis protein CbiM; K02007 cobalt/nickel transport system permease protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
cobalamin (vitamin B12) biosynthesis protein CbiM
RIFCSPLOWO2_02_DPX4_39_17_rifcsplowo2_02_sub10_scaffold_187_3
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

2660..3373
DNA (714bp) protein (238aa)
cobalt ABC transporter permease; K02008 cobalt/nickel transport system permease protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Cobalt ABC transporter, inner membrane subunit CbiQ id=3571966 bin=GWF2_OP3_43_52 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
cobalt ABC transporter permease
RIFCSPLOWO2_02_DPX4_39_17_rifcsplowo2_02_sub10_scaffold_187_4
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

3358..4182
DNA (825bp) protein (275aa)
Phosphonate C-P lyase system protein PhnK n=1 Tax=Streptomyces sp. C RepID=D9VZM9_9ACTO
cobalt ABC transporter ATPase subunit; K02006 cobalt/nickel transport system ATP-binding protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
cobalt ABC transporter ATPase subunit
RIFCSPLOWO2_02_DPX4_39_17_rifcsplowo2_02_sub10_scaffold_187_5
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

4311..4958
DNA (648bp) protein (216aa)
transaldolase (EC:2.2.1.2); K00616 transaldolase [EC:2.2.1.2] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
transaldolase (EC:2.2.1.2)
Probable transaldolase n=1 Tax=Desulfurobacterium thermolithotrophum (strain DSM 11699 / BSA) RepID=F0S0Y8_DESTD
RIFCSPLOWO2_02_DPX4_39_17_rifcsplowo2_02_sub10_scaffold_187_6
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

5065..6003
DNA (939bp) protein (313aa)
phosphonate-transporting ATPase (EC:3.6.3.28); K09695 lipooligosaccharide transport system ATP-binding protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
phosphonate-transporting ATPase (EC:3.6.3.28)
ABC transporter-related protein; K09695 lipooligosaccharide transport system ATP-binding protein id=14424633 bin=bin1_lowGC species=Methanoculleus marisnigri genus=Methanoculleus taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=bin1_lowGC organism_group=Unknown_CP
RIFCSPLOWO2_02_DPX4_39_17_rifcsplowo2_02_sub10_scaffold_187_7
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

6143..6808
DNA (666bp) protein (222aa)
Nodulation protein J n=1 Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YFL7_THEYD
nodulation protein J; K09694 lipooligosaccharide transport system permease protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
nodulation protein J
RIFCSPLOWO2_02_DPX4_39_17_rifcsplowo2_02_sub10_scaffold_187_8
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(6853..7653)
DNA (801bp) protein (267aa)
trpC; indole-3-glycerol-phosphate synthase (EC:4.1.1.48); K01609 indole-3-glycerol phosphate synthase [EC:4.1.1.48] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Indole-3-glycerol phosphate synthase id=2096810 bin=GWB2_Nitrospirae_rel_47_37 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
trpC; Indole-3-glycerol phosphate synthase
RIFCSPLOWO2_02_DPX4_39_17_rifcsplowo2_02_sub10_scaffold_187_9
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(7696..8721)
DNA (1026bp) protein (342aa)
trpD; anthranilate phosphoribosyltransferase (EC:2.4.2.18); K00766 anthranilate phosphoribosyltransferase [EC:2.4.2.18] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
trpD; anthranilate phosphoribosyltransferase (EC:2.4.2.18)
Anthranilate phosphoribosyltransferase id=1708129 bin=GWB2_Proteobacteria_55_19 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
RIFCSPLOWO2_02_DPX4_39_17_rifcsplowo2_02_sub10_scaffold_187_10
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

8879..9043
DNA (165bp) protein (55aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPLOWO2_02_DPX4_39_17_rifcsplowo2_02_sub10_scaffold_187_11
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(9146..9742)
DNA (597bp) protein (199aa)
Transposase (IS1294 family protein) n=1 Tax=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) RepID=C0QCW9_DESAH
transposase (IS1294 family protein) Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
transposase (IS1294 family protein)
RIFCSPLOWO2_02_DPX4_39_17_rifcsplowo2_02_sub10_scaffold_187_12
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(9726..9893)
DNA (168bp) protein (56aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPLOWO2_02_DPX4_39_17_rifcsplowo2_02_sub10_scaffold_187_13
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

9951..10523
DNA (573bp) protein (191aa)
shkA; sensory box histidine kinase Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Putative Hybrid histidine kinase id=2268989 bin=GWA2_Elusimicrobia_66_18 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
shkA; hypothetical protein
RIFCSPLOWO2_02_DPX4_39_17_rifcsplowo2_02_sub10_scaffold_187_14
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(10577..10687)
DNA (111bp) protein (37aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPLOWO2_02_DPX4_39_17_rifcsplowo2_02_sub10_scaffold_187_15
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(10930..11661)
DNA (732bp) protein (244aa)
hemolysin A; K06442 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Hemolysin A n=1 Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YHY6_THEYD
hemolysin A
RIFCSPLOWO2_02_DPX4_39_17_rifcsplowo2_02_sub10_scaffold_187_16
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(11680..13620)
DNA (1941bp) protein (647aa)
1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7); K01662 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
hypothetical protein n=1 Tax=Nitrospina sp. AB-629-B18 RepID=UPI00035DB1D4
RIFCSPLOWO2_02_DPX4_39_17_rifcsplowo2_02_sub10_scaffold_187_17
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(13711..14667)
DNA (957bp) protein (319aa)
polyprenyl synthetase; K13789 geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Farnesyl-diphosphate synthase id=4370665 bin=GWC2_Nitrospirae-rel_56_14 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
polyprenyl synthetase
RIFCSPLOWO2_02_DPX4_39_17_rifcsplowo2_02_sub10_scaffold_187_18
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

14813..15754
DNA (942bp) protein (314aa)
NAD-dependent epimerase/dehydratase Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Putative uncharacterized protein id=4739658 bin=GWC2_Nitrospirae_57_13 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
epimerase
RIFCSPLOWO2_02_DPX4_39_17_rifcsplowo2_02_sub10_scaffold_187_19
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

15815..16879
DNA (1065bp) protein (355aa)
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1); K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=2 Tax=Geobacter metallireducens RepID=Q39VY7_GEOMG
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
RIFCSPLOWO2_02_DPX4_39_17_rifcsplowo2_02_sub10_scaffold_187_20
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists


16994..18709
DNA (1716bp) protein (572aa)
prolyl-tRNA synthetase; K01881 prolyl-tRNA synthetase [EC:6.1.1.15] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Proline--tRNA ligase n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=SYP_GEODF
prolyl-tRNA synthetase
RIFCSPLOWO2_02_DPX4_39_17_rifcsplowo2_02_sub10_scaffold_187_21
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

18936..19784
DNA (849bp) protein (283aa)
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein
Hypothetical exported protein id=3750539 bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
RIFCSPLOWO2_02_DPX4_39_17_rifcsplowo2_02_sub10_scaffold_187_22
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

19891..21075
DNA (1185bp) protein (395aa)
TPR repeat-containing protein n=1 Tax=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) RepID=A8ZRT0_DESOH
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein
RIFCSPLOWO2_02_DPX4_39_17_rifcsplowo2_02_sub10_scaffold_187_23
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

21096..21230
DNA (135bp) protein (45aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPLOWO2_02_DPX4_39_17_rifcsplowo2_02_sub10_scaffold_187_24
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(21316..21939)
DNA (624bp) protein (208aa)
Glycerol-3-phosphate acyltransferase n=1 Tax=Melioribacter roseus (strain P3M) RepID=I6Z7C7_MELRP
glycerol-3-phosphate acyltransferase Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
glycerol-3-phosphate acyltransferase
RIFCSPLOWO2_02_DPX4_39_17_rifcsplowo2_02_sub10_scaffold_187_25
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

22059..22964
DNA (906bp) protein (302aa)
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Uncharacterized protein id=3454611 bin=GWC2_Deltaproteobacteria_42_51 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
hypothetical protein
RIFCSPLOWO2_02_DPX4_39_17_rifcsplowo2_02_sub10_scaffold_187_26
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(23157..24074)
DNA (918bp) protein (306aa)
arginase (EC:3.5.3.1) Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
arginase (EC:3.5.3.1)
Arginase family protein id=2423574 bin=GWA2_Ignavibacteriae_54_16_partial species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Ignavibacteriae_54_16_partial organism_group=Ignavibacteria
RIFCSPLOWO2_02_DPX4_39_17_rifcsplowo2_02_sub10_scaffold_187_27
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(24061..24324)
DNA (264bp) protein (88aa)
prepilin peptidase (EC:3.4.23.43); K02654 leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
prepilin peptidase (EC:3.4.23.43)
Type 4 prepilin-like proteins leader peptide-processing enzyme id=1703069 bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
RIFCSPLOWO2_02_DPX4_39_17_rifcsplowo2_02_sub10_scaffold_187_28
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

24386..24568
DNA (183bp) protein (61aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPLOWO2_02_DPX4_39_17_rifcsplowo2_02_sub10_scaffold_187_29
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

24625..24780
DNA (156bp) protein (52aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPLOWO2_02_DPX4_39_17_rifcsplowo2_02_sub10_scaffold_187_30
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

24767..24868
DNA (102bp) protein (34aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Displaying items 1-30 of 42 in total

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