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rifcsplowo2_02_scaffold_11121

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_02_scaffold_11121_1
AR19, Pacearchaeaota, DPANN, Archaea

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comp(2..157)
-----------------
DNA (156bp)
protein (52aa)
cysteinyl-tRNA synthetase (EC:6.1.1.16); K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16] Tax=AR19
cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase n=1 Tax=Methanobacterium sp. (strain AL-21) RepID=F0T6D8_METSL
rifcsplowo2_02_scaffold_11121_2
Dictyoglomus turgidum, Dictyoglomus, Dictyoglomales, Dictyoglomia, Dictyoglomi, Bacteria

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comp(138..806)
-----------------
DNA (669bp)
protein (223aa)
Serine acetyltransferase n=1 Tax=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) RepID=B8E093_DICTD
serine O-acetyltransferase
Serine O-acetyltransferase {ECO:0000313|EMBL:ACK42538.1}; TaxID=515635 species="Bacteria; Dictyoglomi; Dictyoglomales; Dictyoglomaceae; Dictyoglomus.;" source="Dictyoglomus turgidum (strain Z-1310 / D
rifcsplowo2_02_scaffold_11121_3
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(829..1989)
-----------------
DNA (1161bp)
protein (387aa)
cystathionine gamma-lyase (EC:4.4.1.1); K01758 cystathionine gamma-lyase [EC:4.4.1.1] Tax=RBG_16_Deltaproteobacteria_49_23_curated
Cystathionine gamma-lyase n=1 Tax=Pyrococcus yayanosii (strain CH1 / JCM 16557) RepID=F8AJ35_PYRYC rbh
cystathionine gamma-lyase
rifcsplowo2_02_scaffold_11121_4
GWB2_Planctomycetes_41_19_curated, Brocadiales, Planctomycetes, Bacteria

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comp(2004..2999)
-----------------
DNA (996bp)
protein (332aa)
cystathionine beta-synthase; K01697 cystathionine beta-synthase [EC:4.2.1.22] Tax=GWB2_Planctomycetes_41_19_curated
Cysteine synthase id=3941443 bin=GWA2_Planctomycetia_40_7 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWA2_Planctomycetia_40_7 organism_group=Planctomycetes
cbs1; cystathionine beta-synthase
rifcsplowo2_02_scaffold_11121_trna_1
unknown

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comp(3196..3296)
-----------------
DNA (101bp)
transferRNA
rifcsplowo2_02_scaffold_11121_5
AR11, Woesearchaeaota, DPANN, Archaea

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3534..4070
-----------------
DNA (537bp)
protein (179aa)
Ribosomal protein L16 Tax=AR11
50S ribosomal protein L16; K02866 large subunit ribosomal protein L10e id=5044620 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
50S ribosomal protein L10e
rifcsplowo2_02_scaffold_11121_6

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4191..4472
-----------------
DNA (282bp)
protein (94aa)
Marine sediment metagenome DNA, contig: S01H1_S07743 {ECO:0000313|EMBL:GAG01145.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
DNA/RNA-binding protein Alba; K03622 archaea-specific DNA-binding protein id=5043654 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
DNA/RNA-binding protein Alba
rifcsplowo2_02_scaffold_11121_7
CG_Omnitr_06, Omnitrophica, Bacteria

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comp(4476..5636)
-----------------
DNA (1161bp)
protein (387aa)
hypothetical protein n=1 Tax=unclassified candidate division pSL4 RepID=UPI00038065CC
UBA/THIF-type NAD/FAD binding domain-containing protein; K11996 adenylyltransferase and sulfurtransferase Tax=CG_Omnitr_06
UBA/THIF-type NAD/FAD binding domain-containing protein
rifcsplowo2_02_scaffold_11121_8
unknown

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comp(5682..6746)
-----------------
DNA (1065bp)
protein (355aa)

This feature has no annotations

rifcsplowo2_02_scaffold_11121_9
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(6792..8165)
-----------------
DNA (1374bp)
protein (458aa)
Putative dihydrolipoamide dehydrogenase n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILP2_NITGG
dihydrolipoamide dehydrogenase
Putative dihydrolipoamide dehydrogenase {ECO:0000313|EMBL:AFU59587.1}; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source=
rifcsplowo2_02_scaffold_11121_10
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

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8592..9125
-----------------
DNA (534bp)
protein (178aa)
homolog to cytochrome c-type biogenesis protein id=14632227 bin=bin9_gal15 species=Nocardiopsis baichengensis genus=Nocardiopsis taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin9_gal15 organism_group=GAL15
homolog to cytochrome c-type biogenesis protein Tax=CSP1_3_Armatimonadetes
rifcsplowo2_02_scaffold_11121_11
CG_Delta_07, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(9004..9891)
-----------------
DNA (888bp)
protein (296aa)
hypothetical protein Tax=CG_Delta_07
Uncharacterized protein id=5800436 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
rifcsplowo2_02_scaffold_11121_12
Clostridium sp. HMP27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9925..10071)
-----------------
DNA (147bp)
protein (49aa)
hypothetical protein n=1 Tax=Clostridium sp. JC122 RepID=UPI0002896749
Alanine racemase {ECO:0000313|EMBL:KGK86147.1}; TaxID=1487921 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HMP27.;"
pyridoxal phosphate enzyme, YggS family
rifcsplowo2_02_scaffold_11121_13
Methanosarcina sp. Kolksee, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(10065..10520)
-----------------
DNA (456bp)
protein (152aa)
Uncharacterized protein n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46A69_METBF
pyridoxal phosphate enzyme, YggS family
Pyridoxal phosphate enzyme, YggS family {ECO:0000313|EMBL:AKB47313.1}; TaxID=1434099 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="
rifcsplowo2_02_scaffold_11121_14
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(10672..11628)
-----------------
DNA (957bp)
protein (319aa)
tfb; transcription initiation factor IIB; K03124 transcription initiation factor TFIIB Tax=RBG_13_Woesearchaeota_36_6_curated
transcription factor tFIIB cyclin-like protein; K03124 transcription initiation factor TFIIB id=5043581 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Transcription initiation factor IIB
Displaying 15 items

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