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rifcsplowo2_02_scaffold_14494

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_02_scaffold_14494_1
CG_Woesearch_01, Woesearchaeota, Archaea

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comp(2..1237)
-----------------
DNA (1236bp)
protein (412aa)
id=5046900 Tax=CG_Woesearch_01
id=5046900 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsplowo2_02_scaffold_14494_2
AR11, Woesearchaeaota, DPANN, Archaea

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comp(1228..2358)
-----------------
DNA (1131bp)
protein (377aa)
hypothetical protein Tax=AR11
rifcsplowo2_02_scaffold_14494_3

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comp(2336..2719)
-----------------
DNA (384bp)
protein (128aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO51629.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
id=5046898 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsplowo2_02_scaffold_14494_4
AR11, Woesearchaeaota, DPANN, Archaea

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comp(2745..3155)
-----------------
DNA (411bp)
protein (137aa)
hypothetical protein Tax=AR11
Putative uncharacterized protein id=5046897 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsplowo2_02_scaffold_14494_5
unknown

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comp(3157..3561)
-----------------
DNA (405bp)
protein (135aa)

This feature has no annotations

rifcsplowo2_02_scaffold_14494_6
CG_Micra_06, Micraarchaeota, Archaea

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comp(3561..4127)
-----------------
DNA (567bp)
protein (189aa)
hypothetical protein Tax=CG_Micra_06
hypothetical protein
Uncharacterized protein id=5240968 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsplowo2_02_scaffold_14494_7
CG_Woesearch_02, Woesearchaeota, Archaea

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4349..4837
-----------------
DNA (489bp)
protein (163aa)
rps13p; 30S ribosomal protein S13p; K02952 small subunit ribosomal protein S13 Tax=CG_Woesearch_02
30S ribosomal protein S13P id=5799893 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
30S ribosomal protein S13
rifcsplowo2_02_scaffold_14494_8
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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4846..5364
-----------------
DNA (519bp)
protein (173aa)
30S ribosomal protein S4 n=1 Tax=Pyrococcus sp. (strain NA2) RepID=F4HJ21_PYRSN
30S ribosomal protein S4 Tax=RBG_13_Woesearchaeota_36_6_curated
30S ribosomal protein S4
rifcsplowo2_02_scaffold_14494_9
CG_Woesearch_03, Woesearchaeota, Archaea

Not on your lists


5366..5764
-----------------
DNA (399bp)
protein (133aa)
rps11p; 30S ribosomal protein S11P; K02948 small subunit ribosomal protein S11 Tax=CG_Woesearch_03
30S ribosomal protein S11 id=5799891 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rps11p; 30S ribosomal protein S11P
rifcsplowo2_02_scaffold_14494_10
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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5779..6585
-----------------
DNA (807bp)
protein (269aa)
RNA polymerase insert; K03047 DNA-directed RNA polymerase subunit D [EC:2.7.7.6] Tax=RBG_13_Woesearchaeota_36_6_curated
DNA-directed RNA polymerase subunit D n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I735_METCZ id=5103687 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
DNA-directed RNA polymerase subunit D
rifcsplowo2_02_scaffold_14494_11
CG_Woesearch_02, Woesearchaeota, Archaea

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6805..7170
-----------------
DNA (366bp)
protein (122aa)
50S ribosomal protein L18e n=2 Tax=Staphylothermus RepID=A3DMQ7_STAMF id=5103681 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L15; K02883 large subunit ribosomal protein L18e Tax=CG_Woesearch_02
50S ribosomal protein L18e
rifcsplowo2_02_scaffold_14494_12

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7222..7635
-----------------
DNA (414bp)
protein (138aa)
50S ribosomal protein L13P n=10 Tax=Thermococcus RepID=RL13_PYRKO id=5103680 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L13P
50S ribosomal protein L13P {ECO:0000313|EMBL:AJF62958.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsplowo2_02_scaffold_14494_13
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists


7637..8041
-----------------
DNA (405bp)
protein (135aa)
30S ribosomal protein S9 n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GZF5_METFV id=5103678 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Suspect SCG annotation. See neighboring gene [rifcsplowo2_02_scaffold_14494_12].
30S ribosomal protein S9; K02996 small subunit ribosomal protein S9 Tax=CG_Woesearch_02
30S ribosomal protein S9
rifcsplowo2_02_scaffold_14494_14
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists


8001..8249
-----------------
DNA (249bp)
protein (83aa)
DNA-directed RNA polymerase subunit N (EC:2.7.7.6); K03058 DNA-directed RNA polymerase subunit N [EC:2.7.7.6] Tax=CG_Woesearch_01
DNA-directed RNA polymerase subunit N (EC:2.7.7.6); K03058 DNA-directed RNA polymerase subunit N [EC:2.7.7.6] id=5045700 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
DNA-directed RNA polymerase subunit N
rifcsplowo2_02_scaffold_14494_15
CG_Pacearch_06, Pacearchaeota, Archaea

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8277..8588
-----------------
DNA (312bp)
protein (104aa)
hypothetical protein Tax=CG_Pacearch_06
hypothetical protein id=5049606 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
hypothetical protein
Displaying 15 items

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