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rifcsplowo2_02_scaffold_3703

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_02_scaffold_3703_1
CG_Woesearch_02, Woesearchaeota, Archaea

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2..937
-----------------
DNA (936bp)
protein (312aa)
DNA polymerase II small subunit (EC:2.7.7.7); K02323 DNA polymerase II small subunit [EC:2.7.7.7] Tax=CG_Woesearch_02
DNA polymerase II small subunit (EC:2.7.7.7); K02323 DNA polymerase II small subunit [EC:2.7.7.7] id=5046338 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
rifcsplowo2_02_scaffold_3703_2
CG_Woesearch_02, Woesearchaeota, Archaea

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952..2409
-----------------
DNA (1458bp)
protein (486aa)
DNA polymerase II large subunit (EC:2.7.7.7); K02322 DNA polymerase II large subunit [EC:2.7.7.7] Tax=CG_Woesearch_02
DNA polymerase II large subunit; K02322 DNA polymerase II large subunit [EC:2.7.7.7] id=5041821 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
DNA polymerase II large subunit
rifcsplowo2_02_scaffold_3703_3
CG_Woesearch_02, Woesearchaeota, Archaea

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2423..4351
-----------------
DNA (1929bp)
protein (643aa)
DNA polymerase II large subunit (EC:2.7.7.7); K02322 DNA polymerase II large subunit [EC:2.7.7.7] Tax=CG_Woesearch_02
DNA polymerase II large subunit n=1 Tax=nanoarchaeote Nst1 RepID=R1E5T5_9ARCH id=5103156 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
DNA polymerase II large subunit
rifcsplowo2_02_scaffold_3703_4
AR4, Woesearchaeaota, DPANN, Archaea

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comp(4407..4802)
-----------------
DNA (396bp)
protein (132aa)
translation initiation factor IF-2 subunit beta; K03238 translation initiation factor 2 subunit 2 id=5041823 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
translation initiation factor IF-2 subunit beta; K03238 translation initiation factor 2 subunit 2 Tax=AR4
Translation initiation factor 2 subunit beta
rifcsplowo2_02_scaffold_3703_5
AR11, Woesearchaeaota, DPANN, Archaea

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4897..5748
-----------------
DNA (852bp)
protein (284aa)
hypothetical protein
Uncharacterized membrane protein Tax=AR11
Uncharacterized membrane protein id=5041824 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsplowo2_02_scaffold_3703_6
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(6025..6660)
-----------------
DNA (636bp)
protein (212aa)
Putative uncharacterized protein Tax=RBG_13_Woesearchaeota_36_6_curated
id=5048854 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
rifcsplowo2_02_scaffold_3703_7

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comp(6683..8704)
-----------------
DNA (2022bp)
protein (674aa)
mcm; DNA replication initiator protein; K10726 replicative DNA helicase Mcm [EC:3.6.4.-] id=5046315 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
DNA replication initiator protein, replicative DNA helicase Mcm {ECO:0000313|EMBL:KHO46116.1}; EC=3.6.4.- {ECO:0000313|EMBL:KHO46116.1};; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.
DNA replication initiator Cdc21/Cdc54
rifcsplowo2_02_scaffold_3703_8

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comp(8732..9286)
-----------------
DNA (555bp)
protein (185aa)
tbpE; transcription factor; K03120 transcription initiation factor TFIID TATA-box-binding protein id=5046314 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
TATA-box-binding protein {ECO:0000256|HAMAP-Rule:MF_00408, ECO:0000256|RuleBase:RU000523}; Box A-binding protein {ECO:0000256|HAMAP-Rule:MF_00408}; TATA sequence-binding protein {ECO:0000256|HAMAP-Rul
TATA-box-binding protein
rifcsplowo2_02_scaffold_3703_9

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9409..10032
-----------------
DNA (624bp)
protein (208aa)
rnpA; ribonuclease P protein component 3 (EC:3.1.26.5); K03539 ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5] id=5046310 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Ribonuclease P/MRP protein subunit RPP1 {ECO:0000313|EMBL:KHO46111.1}; EC=3.1.26.5 {ECO:0000313|EMBL:KHO46111.1};; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
Ribonuclease P protein component 3
rifcsplowo2_02_scaffold_3703_10
GWA2_OD1_31_28_partial, Parcubacteria, Bacteria

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10175..10321
-----------------
DNA (147bp)
protein (49aa)
hypothetical protein Tax=GWA2_OD1_31_28_partial
rifcsplowo2_02_scaffold_3703_11
unknown

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10333..11118
-----------------
DNA (786bp)
protein (262aa)

This feature has no annotations

rifcsplowo2_02_scaffold_3703_12
unknown

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11115..11474
-----------------
DNA (360bp)
protein (120aa)

This feature has no annotations

rifcsplowo2_02_scaffold_3703_13
unknown

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comp(11511..11789)
-----------------
DNA (279bp)
protein (93aa)

This feature has no annotations

rifcsplowo2_02_scaffold_3703_14
Strongylocentrotus purpuratus, Strongylocentrotus, Echinoida, Euechinoidea, Echinodermata, Metazoa

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12086..13684
-----------------
DNA (1599bp)
protein (533aa)
SCO-spondin protein (Fragment) n=2 Tax=Strongylocentrotus purpuratus RepID=B3LF41_STRPU
sspo; SCO-spondin
SCO-spondin protein {ECO:0000313|EMBL:CAL69034.1}; Flags: Fragment;; TaxID=7668 species="Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Str
rifcsplowo2_02_scaffold_3703_15
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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13681..14247
-----------------
DNA (567bp)
protein (189aa)
Putative uncharacterized protein n=1 Tax=uncultured archaeon RepID=D1J9G3_9ARCH
putative nucleotidyltransferase Tax=RBG_13_Pacearchaeota_36_9_curated
hypothetical protein
rifcsplowo2_02_scaffold_3703_16
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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14216..14692
-----------------
DNA (477bp)
protein (159aa)
Uncharacterized protein n=1 Tax=Methanoculleus bourgensis (strain ATCC 43281 / DSM 3045 / OCM 15 / MS2) RepID=I7LJ57_METBM
hypothetical protein
Tax=RBG_13_Pacearchaeota_36_9_curated
rifcsplowo2_02_scaffold_3703_17
RBG_16_Micrarchaeota_49_10_curated, Micrarchaeota, Archaea

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14676..14912
-----------------
DNA (237bp)
protein (79aa)
Nucleotidyltransferase n=1 Tax=uncultured archaeon GZfos13E1 RepID=Q64E87_9ARCH
DNA polymerase beta domain-containing protein region Tax=RBG_16_Micrarchaeota_49_10_curated
rifcsplowo2_02_scaffold_3703_18
CG_Aenigma_01, Aenigmaarchaeota, Archaea

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14920..15417
-----------------
DNA (498bp)
protein (166aa)
hypothetical protein
PIN domain-like Tax=CG_Aenigma_01
id=5241067 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsplowo2_02_scaffold_3703_19
unknown

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15595..16155
-----------------
DNA (561bp)
protein (187aa)

This feature has no annotations

rifcsplowo2_02_scaffold_3703_20
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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16158..22631
-----------------
DNA (6474bp)
protein (2158aa)
WD40-like Beta Propeller id=3409996 bin=GWA2_Ignavibacteria_55_11 species=Bacillus cereus genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
WD40-like beta Propeller containing protein
WD40-like beta Propeller containing protein {ECO:0000313|EMBL:AHG92466.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
rifcsplowo2_02_scaffold_3703_21
unknown

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22628..22759
-----------------
DNA (132bp)
protein (44aa)

This feature has no annotations

rifcsplowo2_02_scaffold_3703_22
unknown

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22792..22938
-----------------
DNA (147bp)
protein (49aa)

This feature has no annotations

rifcsplowo2_02_scaffold_3703_23
RIFOXYC2_FULL_RIF01_39_67_curated, RIF1, Bacteria

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23077..24561
-----------------
DNA (1485bp)
protein (495aa)
seg Tax=RIFOXYC2_FULL_RIF01_39_67_curated
rifcsplowo2_02_scaffold_3703_24
GWA2_Bacteroidetes_30_7_curated, Bacteroidia, Bacteroidetes, Bacteria

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24558..30419
-----------------
DNA (5862bp)
protein (1954aa)
Tax=GWA2_Bacteroidetes_30_7_curated
rifcsplowo2_02_scaffold_3703_25
unknown

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30416..30568
-----------------
DNA (153bp)
protein (51aa)

This feature has no annotations

Displaying 25 items

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