ggKbase home page

rifcsplowo2_02_scaffold_1997

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_02_scaffold_1997_1
AR6, Pacearchaeaota, DPANN, Archaea

Not on your lists

137..430
-----------------
DNA (294bp)
protein (98aa)
hypothetical protein Tax=AR6
rifcsplowo2_02_scaffold_1997_2
BJP_IG2102_Methanoregula_52_95, Methanoregula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(687..1127)
-----------------
DNA (441bp)
protein (147aa)
PilT protein domain protein n=1 Tax=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) RepID=A3CWN0_METMJ
twitching motility protein PilT Tax=BJP_IG2102_Methanoregula_52_95
twitching motility protein PilT
rifcsplowo2_02_scaffold_1997_3
unknown

Not on your lists

comp(1114..1359)
-----------------
DNA (246bp)
protein (82aa)

This feature has no annotations

rifcsplowo2_02_scaffold_1997_4
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

1672..3372
-----------------
DNA (1701bp)
protein (567aa)
hypothetical protein; K10747 DNA ligase 1 [EC:6.5.1.1] Tax=RBG_13_Pacearchaeota_36_9_curated
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000376C7D7
ATP-dependent DNA ligase
rifcsplowo2_02_scaffold_1997_5
unknown

Not on your lists

comp(3332..4273)
-----------------
DNA (942bp)
protein (314aa)

This feature has no annotations

rifcsplowo2_02_scaffold_1997_6
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

4563..5117
-----------------
DNA (555bp)
protein (185aa)
TATA-box binding protein Tax=RBG_13_Pacearchaeota_36_9_curated
2-alkenal reductase; K03120 transcription initiation factor TFIID TATA-box-binding protein id=5048857 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
TATA-box-binding protein
rifcsplowo2_02_scaffold_1997_7
unknown

Not on your lists

5175..5654
-----------------
DNA (480bp)
protein (160aa)

This feature has no annotations

rifcsplowo2_02_scaffold_1997_8
unknown

Not on your lists

5819..6202
-----------------
DNA (384bp)
protein (128aa)

This feature has no annotations

rifcsplowo2_02_scaffold_1997_9
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

6310..8316
-----------------
DNA (2007bp)
protein (669aa)
mcm; replicative DNA helicase Mcm (EC:3.6.1.-); K10726 replicative DNA helicase Mcm [EC:3.6.4.-] Tax=RBG_13_Pacearchaeota_36_9_curated
DNA replication initiator (Cdc21/Cdc54) n=1 Tax=Candidatus Haloredivivus sp. G17 RepID=H0AET4_9EURY id=5103224 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
DNA replication initiator Cdc21/Cdc54
rifcsplowo2_02_scaffold_1997_10
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists

comp(8317..9489)
-----------------
DNA (1173bp)
protein (391aa)
Uncharacterized protein n=1 Tax=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) RepID=C5A1Z7_THEGJ
hypothetical protein Tax=CG_Pacearch_05
hypothetical protein
rifcsplowo2_02_scaffold_1997_11
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

comp(9622..9831)
-----------------
DNA (210bp)
protein (70aa)
Marine sediment metagenome DNA, contig: S06H3_L01137 Tax=CG_Pacearch_06
rifcsplowo2_02_scaffold_1997_12
RIFOXYB1_FULL_RIF_OD1_06_38_37_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

10053..11039
-----------------
DNA (987bp)
protein (329aa)
hypothetical protein n=1 Tax=Hydrogenedentes bacterium JGI 0000039-J10 RepID=UPI000362130E rbh
DNA methylase N-4/N-6 domain-containing protein Tax=RIFOXYB1_FULL_RIF_OD1_06_38_37_curated
DNA methylase N-4/N-6 domain-containing protein
rifcsplowo2_02_scaffold_1997_13
unknown

Not on your lists

11036..11386
-----------------
DNA (351bp)
protein (117aa)

This feature has no annotations

rifcsplowo2_02_scaffold_1997_14
unknown

Not on your lists

comp(11354..11965)
-----------------
DNA (612bp)
protein (204aa)

This feature has no annotations

rifcsplowo2_02_scaffold_1997_15

Not on your lists

12061..12504
-----------------
DNA (444bp)
protein (148aa)
Uncharacterized protein id=4857199 bin=GWA2_Elusimicrobia_56_46 species=Methanofollis liminatans genus=Methanofollis taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWA2_Elusimicrobia_56_46 organism_group=Elusimicrobia organism_desc=Good
Uncharacterized protein {ECO:0000313|EMBL:KKM61267.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
rifcsplowo2_02_scaffold_1997_16
BJP_IG2102_Methanoregula_52_95, Methanoregula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

12507..13058
-----------------
DNA (552bp)
protein (184aa)
hypothetical protein n=1 Tax=Marine Group I thaumarchaeote SCGC AB-629-I23 RepID=UPI00037E1F1C
hypothetical protein Tax=BJP_IG2102_Methanoregula_52_95
hypothetical protein
rifcsplowo2_02_scaffold_1997_17
unknown

Not on your lists

13055..13276
-----------------
DNA (222bp)
protein (74aa)

This feature has no annotations

rifcsplowo2_02_scaffold_1997_18
CG_Dehalo_02, Dehalococcoidia, Chloroflexi, Bacteria

Not on your lists

comp(13279..13995)
-----------------
DNA (717bp)
protein (239aa)
Marine sediment metagenome DNA, contig: S01H4_L04385 Tax=CG_Dehalo_02
rifcsplowo2_02_scaffold_1997_19
RBG_16_Micrarchaeota_36_9_curated, Micrarchaeota, Archaea

Not on your lists

14143..16575
-----------------
DNA (2433bp)
protein (811aa)
C-terminal beta-propeller domain-contain secreted protein-like protein Tax=RBG_16_Micrarchaeota_36_9_curated
Putative copper amine oxidase-like protein id=5800765 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
secreted protein with C-terminal beta-propeller domain
rifcsplowo2_02_scaffold_1997_20
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

16655..17728
-----------------
DNA (1074bp)
protein (358aa)
DNA integrity scanning protein DisA n=1 Tax=Caldalkalibacillus thermarum TA2.A1 RepID=F5L598_9BACI
DNA integrity scanning protein DisA; K07067 DNA integrity scanning protein Tax=RBG_13_Pacearchaeota_36_9_curated
DNA integrity scanning protein DisA
rifcsplowo2_02_scaffold_1997_21
unknown

Not on your lists

17787..18299
-----------------
DNA (513bp)
protein (171aa)

This feature has no annotations

rifcsplowo2_02_scaffold_1997_22
unknown

Not on your lists

18349..18834
-----------------
DNA (486bp)
protein (162aa)

This feature has no annotations

rifcsplowo2_02_scaffold_1997_23
R_OP11_Gottesmanbacteria_39_14, Gottesmanbacteria, Microgenomates, Bacteria

Not on your lists

19266..19565
-----------------
DNA (300bp)
protein (100aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2CWL1_9BACT
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_OP11_Gottesmanbacteria_39_14_curated
hypothetical protein
rifcsplowo2_02_scaffold_1997_24
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

19647..20678
-----------------
DNA (1032bp)
protein (344aa)
hypothetical protein
Phosphoesterase, DHHA1 Tax=RBG_13_Pacearchaeota_36_9_curated
id=5049706 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
rifcsplowo2_02_scaffold_1997_25
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20735..22237
-----------------
DNA (1503bp)
protein (501aa)
Regulator of chromosome condensation Tax=RBG_13_Deltaproteobacteria_65_10_curated
Regulator of chromosome condensation id=2178720 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
PE-PGRS family protein
rifcsplowo2_02_scaffold_1997_26
RBG_16_Pacearchaeota_35_8_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

22384..23391
-----------------
DNA (1008bp)
protein (336aa)
dhps, MGC76269; deoxyhypusine synthase (EC:2.5.1.46); K00809 deoxyhypusine synthase [EC:2.5.1.46] Tax=RBG_16_Pacearchaeota_35_8_curated
deoxyhypusine synthase, putative (EC:2.5.1.46); K00809 deoxyhypusine synthase [EC:2.5.1.46] id=5048269 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
putative deoxyhypusine synthase (EC:2.5.1.46)
rifcsplowo2_02_scaffold_1997_27
unknown

Not on your lists

comp(23394..23726)
-----------------
DNA (333bp)
protein (111aa)

This feature has no annotations

rifcsplowo2_02_scaffold_1997_28
CG_Pacearch_02, Pacearchaeota, Archaea

Not on your lists


comp(23788..25224)
-----------------
DNA (1437bp)
protein (479aa)
prolyl-tRNA synthetase; K01881 prolyl-tRNA synthetase [EC:6.1.1.15] Tax=CG_Pacearch_02
Proline--tRNA ligase n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DI64_9EURY id=5102935 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Proline-tRNA ligase
rifcsplowo2_02_scaffold_1997_29
unknown

Not on your lists

25311..25565
-----------------
DNA (255bp)
protein (85aa)

This feature has no annotations

Displaying 29 items

View Taxonomy