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rifcsplowo2_02_scaffold_4235

Search features with annotation key words

Displaying items 1-30 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_02_scaffold_4235_1
Aciduliprofundum sp. MAR08-339, Aciduliprofundum, Euryarchaeota, Archaea

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183..2054
-----------------
DNA (1872bp)
protein (624aa)
Asparagine synthetase n=1 Tax=Aciduliprofundum sp. (strain MAR08-339) RepID=L0HKZ1_ACIS0 rbh
asparagine synthase, glutamine-hydrolyzing
Asparagine synthase, glutamine-hydrolyzing {ECO:0000313|EMBL:AGB04675.1}; TaxID=673860 species="Archaea; Euryarchaeota; Aciduliprofundum.;" source="Aciduliprofundum sp. (strain MAR08-339).;"
rifcsplowo2_02_scaffold_4235_2
unknown

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2103..3038
-----------------
DNA (936bp)
protein (312aa)

This feature has no annotations

rifcsplowo2_02_scaffold_4235_3
AR19, Pacearchaeaota, DPANN, Archaea

Not on your lists

3083..3913
-----------------
DNA (831bp)
protein (277aa)
UPI00029AA32C related cluster Tax=AR19
rifcsplowo2_02_scaffold_4235_4
AR18, Woesearchaeaota, DPANN, Archaea

Not on your lists

3937..4470
-----------------
DNA (534bp)
protein (178aa)
hypothetical protein id=5051057 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
hypothetical protein Tax=AR18
rifcsplowo2_02_scaffold_4235_trna_1
unknown

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4478..4561
-----------------
DNA (84bp)
transferRNA
rifcsplowo2_02_scaffold_4235_5
unknown

Not on your lists

4610..5095
-----------------
DNA (486bp)
protein (162aa)

This feature has no annotations

rifcsplowo2_02_scaffold_4235_6
CG_Pacearch_01, Pacearchaeota, Archaea

Not on your lists


5290..5646
-----------------
DNA (357bp)
protein (119aa)
50S ribosomal protein L18e n=1 Tax=Thermoplasmatales archaeon Gpl RepID=T0LUJ3_9EURY
LSU ribosomal protein L18AE Tax=CG_Pacearch_01
ribosomal protein L15
rifcsplowo2_02_scaffold_4235_7
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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5643..6053
-----------------
DNA (411bp)
protein (137aa)
50S ribosomal protein L13P n=10 Tax=Thermococcus RepID=RL13_PYRKO id=5103680 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
rplM; 50S ribosomal protein L13; K02871 large subunit ribosomal protein L13 Tax=RBG_13_Pacearchaeota_36_9_curated
50S ribosomal protein L13P
rifcsplowo2_02_scaffold_4235_8
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists


6050..6472
-----------------
DNA (423bp)
protein (141aa)
30S ribosomal protein S9 n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000363BEDB
50S ribosomal protein S9; K02996 small subunit ribosomal protein S9 Tax=RBG_13_Pacearchaeota_36_9_curated
30S ribosomal protein S9
rifcsplowo2_02_scaffold_4235_9
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

6511..7131
-----------------
DNA (621bp)
protein (207aa)
hypothetical protein Tax=CG_Pacearch_06
Uncharacterized protein id=5800578 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
rifcsplowo2_02_scaffold_4235_10
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(7123..9030)
-----------------
DNA (1908bp)
protein (636aa)
Rad3-related DNA helicase n=1 Tax=Methanobrevibacter ruminantium (strain ATCC 35063 / DSM 1093 / JCM 13430 / M1) RepID=D3E2S1_METRM
Marine sediment metagenome DNA, contig: S12H4_L01639 Tax=RBG_13_Pacearchaeota_36_9_curated
Rad3-related DNA helicase
rifcsplowo2_02_scaffold_4235_11

Not on your lists

comp(9041..9343)
-----------------
DNA (303bp)
protein (101aa)
Glutamine-hydrolyzing GMP synthase {ECO:0000313|EMBL:KKS50073.1}; TaxID=1618906 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_42_21.;"
rifcsplowo2_02_scaffold_4235_12
AR19, Pacearchaeaota, DPANN, Archaea

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comp(9374..10168)
-----------------
DNA (795bp)
protein (265aa)
hypothetical protein Tax=AR19
hypothetical protein id=14424589 bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein
rifcsplowo2_02_scaffold_4235_13

Not on your lists

comp(10198..11088)
-----------------
DNA (891bp)
protein (297aa)
Marine sediment metagenome DNA, contig: S01H1_S17392 {ECO:0000313|EMBL:GAG26213.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
hypothetical protein id=24456160 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Shewanella taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
rifcsplowo2_02_scaffold_4235_14
unknown

Not on your lists

11170..11493
-----------------
DNA (324bp)
protein (108aa)

This feature has no annotations

rifcsplowo2_02_scaffold_4235_15
unknown

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11525..11794
-----------------
DNA (270bp)
protein (90aa)

This feature has no annotations

rifcsplowo2_02_scaffold_4235_16
Picrophilus oshimae, Picrophilus, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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11846..12985
-----------------
DNA (1140bp)
protein (380aa)
Modification methylase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.113 {ECO:0000256|RuleBase:RU362026};; TaxID=46632 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales; Picrophilaceae; P
Putative methyltransferase n=1 Tax=Picrophilus oshimae RepID=G5CCL0_9EURY
DNA methylase N-4/N-6 domain-containing protein
rifcsplowo2_02_scaffold_4235_17
unknown

Not on your lists

12999..13259
-----------------
DNA (261bp)
protein (87aa)

This feature has no annotations

rifcsplowo2_02_scaffold_4235_18
unknown

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13262..13759
-----------------
DNA (498bp)
protein (166aa)

This feature has no annotations

rifcsplowo2_02_scaffold_4235_19
RIFOXYD2_FULL_Elusimicrobia_34_30_curated, Elusimicrobia, Bacteria

Not on your lists

13756..14481
-----------------
DNA (726bp)
protein (242aa)
Uncharacterized protein n=1 Tax=Bacillus cereus FRI-35 RepID=M4H9D2_BACCE
hypothetical protein Tax=RIFOXYD2_FULL_Elusimicrobia_34_30_curated
hypothetical protein
rifcsplowo2_02_scaffold_4235_20
unknown

Not on your lists

14677..14886
-----------------
DNA (210bp)
protein (70aa)

This feature has no annotations

rifcsplowo2_02_scaffold_4235_21
unknown

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14886..15116
-----------------
DNA (231bp)
protein (77aa)

This feature has no annotations

rifcsplowo2_02_scaffold_4235_22
Dermacoccus nishinomiyaensis, Dermacoccus, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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15113..15637
-----------------
DNA (525bp)
protein (175aa)
ISMsm5, transposase n=1 Tax=Dermacoccus sp. Ellin185 RepID=E3BDS3_9MICO
transposase
Transposase {ECO:0000313|EMBL:AIF39677.1}; TaxID=1274 species="Bacteria; Actinobacteria; Micrococcales; Dermacoccaceae; Dermacoccus.;" source="Dermacoccus nishinomiyaensis.;"
rifcsplowo2_02_scaffold_4235_23
unknown

Not on your lists

comp(15599..15901)
-----------------
DNA (303bp)
protein (101aa)

This feature has no annotations

rifcsplowo2_02_scaffold_4235_24
RBG_13_Pacearchaeota_33_26_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(15957..17378)
-----------------
DNA (1422bp)
protein (474aa)
Fe-S oxidoreductase (EC:4.-.-.-)
Fe-S oxidoreductase n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I4C4_METCZ
radical SAM protein Tax=RBG_13_Pacearchaeota_33_26_curated
rifcsplowo2_02_scaffold_4235_25
R_SM2F11_45_18, SM2F11, Bacteria

Not on your lists

17492..18295
-----------------
DNA (804bp)
protein (268aa)
peptidase M10A and M12B matrixin and adamalysin Tax=RIFCSPHIGHO2_01_FULL_SM2F11_45_18_curated
hypothetical protein
hypothetical protein id=5241269 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsplowo2_02_scaffold_4235_26
AR19, Pacearchaeaota, DPANN, Archaea

Not on your lists

comp(18434..19354)
-----------------
DNA (921bp)
protein (307aa)
Uncharacterized protein n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6AV31_9ARCH
hypothetical protein Tax=AR19
hypothetical protein
rifcsplowo2_02_scaffold_4235_27
RBG_13_Pacearchaeota_33_26_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(19420..20640)
-----------------
DNA (1221bp)
protein (407aa)
Tax=RBG_13_Pacearchaeota_33_26_curated
rifcsplowo2_02_scaffold_4235_28
RBG_13_Pacearchaeota_33_26_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

20781..22187
-----------------
DNA (1407bp)
protein (469aa)
radical SAM protein Tax=RBG_13_Pacearchaeota_33_26_curated
Radical SAM domain protein id=4349814 bin=GWF2_Lentisphaerae_49_21 species=unknown genus=Staphylothermus taxon_order=Desulfurococcales taxon_class=Thermoprotei phylum=Crenarchaeota tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
radical SAM protein
rifcsplowo2_02_scaffold_4235_29
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists

comp(22200..23015)
-----------------
DNA (816bp)
protein (272aa)
integrase family protein n=1 Tax=Anaerophaga thermohalophila DSM 12881 RepID=UPI000237D181 id=5103180 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
phage integrase family protein Tax=CG_Pacearch_05
integrase family protein
Displaying items 1-30 of 59 in total

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