ggKbase home page

rifcsplowo2_02_scaffold_2434

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_02_scaffold_2434_1
CG_Pacearch_02, Pacearchaeota, Archaea

Not on your lists

comp(1..480)
-----------------
DNA (480bp)
protein (160aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Arcobacter nitrofigilis (strain ATCC 33309 / DSM 7299 / LMG 7604 / NCTC 12251 / CI) RepID=D5V6D1_ARCNC
NAD-dependent epimerase/dehydratase Tax=CG_Pacearch_02
NAD-dependent epimerase/dehydratase
rifcsplowo2_02_scaffold_2434_2
unknown

Not on your lists

717..1325
-----------------
DNA (609bp)
protein (203aa)

This feature has no annotations

rifcsplowo2_02_scaffold_2434_3
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists

1385..1825
-----------------
DNA (441bp)
protein (147aa)
Tax=CG_Pacearch_05
rifcsplowo2_02_scaffold_2434_4
unknown

Not on your lists

1877..2845
-----------------
DNA (969bp)
protein (323aa)

This feature has no annotations

rifcsplowo2_02_scaffold_2434_5
CG_Pacearch_02, Pacearchaeota, Archaea

Not on your lists

2892..4628
-----------------
DNA (1737bp)
protein (579aa)
C-methyltransferase Tax=CG_Pacearch_02
Putative uncharacterized protein id=4111648 bin=GWF2_Planctomycetes_42_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Planctomycetes_42_9 organism_group=Planctomycetes
C-methyltransferase
rifcsplowo2_02_scaffold_2434_6
CG_Pacearch_02, Pacearchaeota, Archaea

Not on your lists

4678..5394
-----------------
DNA (717bp)
protein (239aa)
id=5048829 Tax=CG_Pacearch_02
id=5048829 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
rifcsplowo2_02_scaffold_2434_7

Not on your lists

5430..5750
-----------------
DNA (321bp)
protein (107aa)
Uncharacterized protein n=1 Tax=Desulfovibrio fructosivorans JJ RepID=E1JUS2_DESFR
Uncharacterized protein {ECO:0000313|EMBL:KKN55703.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
rifcsplowo2_02_scaffold_2434_8

Not on your lists


6009..6986
-----------------
DNA (978bp)
protein (326aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037EA6E5
50S ribosomal protein L3P {ECO:0000313|EMBL:AJS12773.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L3
rifcsplowo2_02_scaffold_2434_9
unknown

Not on your lists

6983..7429
-----------------
DNA (447bp)
protein (149aa)

This feature has no annotations

rifcsplowo2_02_scaffold_2434_10
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists


7371..8402
-----------------
DNA (1032bp)
protein (344aa)
LSU ribosomal protein L4P n=1 Tax=nanoarchaeote Nst1 RepID=R1FTK3_9ARCH
rpl4lp; 50S ribosomal protein L4P; K02930 large subunit ribosomal protein L4e Tax=RBG_13_Pacearchaeota_36_9_curated
50S ribosomal protein L4
rifcsplowo2_02_scaffold_2434_11
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists


8404..8640
-----------------
DNA (237bp)
protein (79aa)
50S ribosomal protein L23P n=3 Tax=Thermococcus RepID=RL23_PYRKO id=5103254 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L23P; K02892 large subunit ribosomal protein L23 Tax=RBG_13_Pacearchaeota_36_9_curated
50S ribosomal protein L23P
rifcsplowo2_02_scaffold_2434_12
unknown

Not on your lists

8645..9109
-----------------
DNA (465bp)
protein (155aa)

This feature has no annotations

rifcsplowo2_02_scaffold_2434_13
unknown

Not on your lists

9106..9396
-----------------
DNA (291bp)
protein (97aa)

This feature has no annotations

rifcsplowo2_02_scaffold_2434_14

Not on your lists


9398..10105
-----------------
DNA (708bp)
protein (236aa)
50S ribosomal protein L2 n=1 Tax=Thermococcus sibiricus (strain MM 739 / DSM 12597) RepID=C6A162_THESM
50S ribosomal protein L2P {ECO:0000313|EMBL:AJS12762.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl2p; 50S ribosomal protein L2
rifcsplowo2_02_scaffold_2434_15
unknown

Not on your lists

10107..10637
-----------------
DNA (531bp)
protein (177aa)

This feature has no annotations

rifcsplowo2_02_scaffold_2434_16

Not on your lists


10627..11043
-----------------
DNA (417bp)
protein (139aa)
30S ribosomal protein S19 n=1 Tax=Thermococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) RepID=RS19_THEKO
30S ribosomal protein S19P {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rps19p; 30S ribosomal protein S19
rifcsplowo2_02_scaffold_2434_17
RBG_13_Pacearchaeota_33_26_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

11045..11650
-----------------
DNA (606bp)
protein (202aa)
hypothetical protein
Tax=RBG_13_Pacearchaeota_33_26_curated
rifcsplowo2_02_scaffold_2434_18
unknown

Not on your lists

11647..11994
-----------------
DNA (348bp)
protein (116aa)

This feature has no annotations

rifcsplowo2_02_scaffold_2434_19
unknown

Not on your lists

11991..12332
-----------------
DNA (342bp)
protein (114aa)

This feature has no annotations

rifcsplowo2_02_scaffold_2434_20

Not on your lists


12335..12688
-----------------
DNA (354bp)
protein (118aa)
30S ribosomal protein S17P n=1 Tax=Archaeoglobus veneficus (strain DSM 11195 / SNP6) RepID=F2KSU2_ARCVS
30S ribosomal protein S17P {ECO:0000256|HAMAP-Rule:MF_01345}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
SSU ribosomal protein S11e (S17p)
rifcsplowo2_02_scaffold_2434_21

Not on your lists


12685..13086
-----------------
DNA (402bp)
protein (134aa)
50S ribosomal protein L14P n=2 Tax=Methanotorris RepID=F6BD90_METIK id=5103262 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L14P
rifcsplowo2_02_scaffold_2434_22

Not on your lists


13184..13525
-----------------
DNA (342bp)
protein (114aa)
50S ribosomal protein L24P n=1 Tax=Korarchaeum cryptofilum (strain OPF8) RepID=RL24_KORCO
50S ribosomal protein L24P {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L24
rifcsplowo2_02_scaffold_2434_23
unknown

Not on your lists

13522..13773
-----------------
DNA (252bp)
protein (84aa)

This feature has no annotations

rifcsplowo2_02_scaffold_2434_24
RBG_13_Pacearchaeota_33_26_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

13763..14416
-----------------
DNA (654bp)
protein (218aa)
30S ribosomal protein S4e n=1 Tax=nanoarchaeote Nst1 RepID=R1FU02_9ARCH
SSU ribosomal protein s4e; K02987 small subunit ribosomal protein S4e Tax=RBG_13_Pacearchaeota_33_26_curated
30S ribosomal protein S4e
rifcsplowo2_02_scaffold_2434_25

Not on your lists


14418..14960
-----------------
DNA (543bp)
protein (181aa)
50S ribosomal protein L5 n=2 Tax=Methanotorris RepID=F6BD87_METIK id=5103265 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L5P {ECO:0000313|EMBL:AJS12767.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L5
rifcsplowo2_02_scaffold_2434_26
unknown

Not on your lists

14957..15298
-----------------
DNA (342bp)
protein (114aa)

This feature has no annotations

rifcsplowo2_02_scaffold_2434_27
CG_Pacearch_02, Pacearchaeota, Archaea

Not on your lists

15301..15531
-----------------
DNA (231bp)
protein (77aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003729D23
hypothetical protein; K02954 small subunit ribosomal protein S14 Tax=CG_Pacearch_02
SSU ribosomal protein S14P
rifcsplowo2_02_scaffold_2434_28

Not on your lists


15599..15970
-----------------
DNA (372bp)
protein (124aa)
30S ribosomal protein S8 {ECO:0000313|EMBL:AJS12768.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S8; K02994 small subunit ribosomal protein S8 id=5046854 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
30S ribosomal protein S8
rifcsplowo2_02_scaffold_2434_29

Not on your lists


15970..16527
-----------------
DNA (558bp)
protein (186aa)
50S ribosomal protein L6 n=1 Tax=Methanocaldococcus sp. (strain FS406-22) RepID=D3S6E9_METSF
50S ribosomal protein L6P {ECO:0000313|EMBL:AJS12769.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L6
rifcsplowo2_02_scaffold_2434_30
unknown

Not on your lists

16527..16892
-----------------
DNA (366bp)
protein (122aa)

This feature has no annotations

Displaying items 1-30 of 43 in total

View Taxonomy