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rifcsplowo2_02_scaffold_2550

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_02_scaffold_2550_1
unknown

Not on your lists

comp(182..580)
-----------------
DNA (399bp)
protein (133aa)

This feature has no annotations

rifcsplowo2_02_scaffold_2550_2
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists


comp(577..2232)
-----------------
DNA (1656bp)
protein (552aa)
glycyl-tRNA synthetase (EC:6.1.1.14); K01880 glycyl-tRNA synthetase [EC:6.1.1.14] Tax=CG_Pacearch_06
glycyl-tRNA synthetase (EC:6.1.1.14)
Glycyl-tRNA synthetase id=5799897 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsplowo2_02_scaffold_2550_3
unknown

Not on your lists

2506..2700
-----------------
DNA (195bp)
protein (65aa)

This feature has no annotations

rifcsplowo2_02_scaffold_2550_4
unknown

Not on your lists

comp(2981..3793)
-----------------
DNA (813bp)
protein (271aa)

This feature has no annotations

rifcsplowo2_02_scaffold_2550_5
unknown

Not on your lists

comp(4071..4874)
-----------------
DNA (804bp)
protein (268aa)

This feature has no annotations

rifcsplowo2_02_scaffold_2550_6
unknown

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4877..5185
-----------------
DNA (309bp)
protein (103aa)

This feature has no annotations

rifcsplowo2_02_scaffold_2550_trna_2
unknown

Not on your lists

comp(5541..5612)
-----------------
DNA (72bp)
transferRNA
rifcsplowo2_02_scaffold_2550_trna_1
unknown

Not on your lists

comp(5683..5756)
-----------------
DNA (74bp)
transferRNA
rifcsplowo2_02_scaffold_2550_7
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(5845..9018)
-----------------
DNA (3174bp)
protein (1058aa)
hypothetical protein Tax=RBG_13_Pacearchaeota_36_9_curated
parallel beta-helix repeat-containing protein id=5048007 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsplowo2_02_scaffold_2550_8
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists

comp(9022..9723)
-----------------
DNA (702bp)
protein (234aa)
hypothetical protein
Marine sediment metagenome DNA, contig: S01H1_S23427 Tax=CG_Pacearch_05
id=5102982 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
rifcsplowo2_02_scaffold_2550_9
unknown

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comp(9799..10635)
-----------------
DNA (837bp)
protein (279aa)

This feature has no annotations

rifcsplowo2_02_scaffold_2550_10
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

10721..11638
-----------------
DNA (918bp)
protein (306aa)
rnz; ribonuclease Z Rnz (EC:3.1.26.11); K00784 ribonuclease Z [EC:3.1.26.11] Tax=RBG_13_Pacearchaeota_36_9_curated
RNAse Z n=1 Tax=nanoarchaeote Nst1 RepID=R1E5I6_9ARCH id=5103055 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
RNAse Z
rifcsplowo2_02_scaffold_2550_11
unknown

Not on your lists

comp(11652..11918)
-----------------
DNA (267bp)
protein (89aa)

This feature has no annotations

rifcsplowo2_02_scaffold_2550_12
unknown

Not on your lists

comp(11875..12018)
-----------------
DNA (144bp)
protein (48aa)

This feature has no annotations

rifcsplowo2_02_scaffold_2550_13

Not on your lists

comp(12386..12631)
-----------------
DNA (246bp)
protein (82aa)
Like-Sm ribonucleoprotein core n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EEN0_9EURY id=5103084 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Marine sediment metagenome DNA, contig: S01H1_L02178 {ECO:0000313|EMBL:GAF71492.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
Like-Sm ribonucleoprotein core
rifcsplowo2_02_scaffold_2550_14
R_OP11_Daviesbacteria_41_32, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

12723..13295
-----------------
DNA (573bp)
protein (191aa)
Tax=RIFCSPLOWO2_01_FULL_OP11_Daviesbacteria_41_32_curated
rifcsplowo2_02_scaffold_2550_15
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(13296..14489)
-----------------
DNA (1194bp)
protein (398aa)
queuine tRNA-ribosyltransferase (EC:2.4.2.29); K00773 queuine tRNA-ribosyltransferase [EC:2.4.2.29] id=5043744 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
queuine tRNA-ribosyltransferase (EC:2.4.2.29)
queuine tRNA-ribosyltransferase Tax=RBG_13_Pacearchaeota_36_9_curated
rifcsplowo2_02_scaffold_2550_16
R_OD1_Nomurabacteria_33_12, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(14449..15045)
-----------------
DNA (597bp)
protein (199aa)
HAD family phosphatase; K07025 putative hydrolase of the HAD superfamily Tax=RIFCSPHIGHO2_02_FULL_OD1_Nomurabacteria_33_12_curated
Haloacid dehalogenase superfamily protein, subfamily IA, variant 3 with third motif having DD or ED id=5227006 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
HAD-superfamily hydrolase, subfamily IA, variant 3
rifcsplowo2_02_scaffold_2550_17
unknown

Not on your lists

15245..15556
-----------------
DNA (312bp)
protein (104aa)

This feature has no annotations

rifcsplowo2_02_scaffold_2550_18

Not on your lists

15558..16193
-----------------
DNA (636bp)
protein (212aa)
Rhomboid family protein {ECO:0000313|EMBL:AIF01519.1}; TaxID=1457885 species="Archaea; Euryarchaeota; environmental samples.;" source="uncultured marine group II/III euryarchaeote KM3_149_F06.;"
Peptidase S54, rhomboid family protein id=4688817 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
peptidase S54, rhomboid family protein
rifcsplowo2_02_scaffold_2550_19
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(16302..17315)
-----------------
DNA (1014bp)
protein (338aa)
Chromosome segregation and condensation protein ScpA n=1 Tax=Candidatus Parvarchaeum acidophilus ARMAN-5 RepID=D6GVZ3_9EURY id=5103660 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
condensin subunit ScpA; K05896 segregation and condensation protein A Tax=RBG_13_Pacearchaeota_36_9_curated
Chromosome segregation and condensation protein ScpA
rifcsplowo2_02_scaffold_2550_20

Not on your lists

comp(17726..17938)
-----------------
DNA (213bp)
protein (71aa)
30S ribosomal protein S27ae {ECO:0000256|HAMAP-Rule:MF_00777}; TaxID=1579372 species="Archaea.;" source="archaeon GW2011_AR13.;"
30S ribosomal protein S27ae; K02977 small subunit ribosomal protein S27Ae id=5049718 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
rps27AE; 30S ribosomal protein S27ae
rifcsplowo2_02_scaffold_2550_21
unknown

Not on your lists

comp(17971..18177)
-----------------
DNA (207bp)
protein (69aa)

This feature has no annotations

rifcsplowo2_02_scaffold_2550_22
AR1, Pacearchaeaota, DPANN, Archaea

Not on your lists

comp(18218..18631)
-----------------
DNA (414bp)
protein (138aa)
Tax=AR1
rifcsplowo2_02_scaffold_2550_23
RBG_16_Pacearchaeota_35_8_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(18615..18800)
-----------------
DNA (186bp)
protein (62aa)
rpoE2; DNA-directed RNA polymerase subunit E'' (EC:2.7.7.6); K03050 DNA-directed RNA polymerase subunit E" [EC:2.7.7.6] Tax=RBG_16_Pacearchaeota_35_8_curated
DNA-directed RNA polymerase, RpoE2, archaeal n=1 Tax=sediment metagenome RepID=D9PM38_9ZZZZ
DNA-directed RNA polymerase, subunit E
rifcsplowo2_02_scaffold_2550_24
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists


comp(18802..19374)
-----------------
DNA (573bp)
protein (191aa)
DNA-directed RNA polymerase subunit E'; K03049 DNA-directed RNA polymerase subunit E' [EC:2.7.7.6] Tax=RBG_13_Pacearchaeota_36_9_curated
DNA-directed RNA polymerase subunit E n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-C06 RepID=N6VV26_9EURY
DNA-directed RNA polymerase subunit E
rifcsplowo2_02_scaffold_2550_25

Not on your lists

comp(19504..19938)
-----------------
DNA (435bp)
protein (145aa)
Marine sediment metagenome DNA, contig: S01H1_S32875 {ECO:0000313|EMBL:GAG28863.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
rifcsplowo2_02_scaffold_2550_26
unknown

Not on your lists

comp(20072..20353)
-----------------
DNA (282bp)
protein (94aa)

This feature has no annotations

rifcsplowo2_02_scaffold_2550_27
RBG_13_OD1_Falkowbacteria_39_14_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

20688..22655
-----------------
DNA (1968bp)
protein (656aa)
hppA; putative K(+)-stimulated pyrophosphate-energized sodium pump (EC:3.6.1.1) Tax=RBG_13_OD1_Falkowbacteria_39_14_curated
hppA; membrane-bound proton-translocating pyrophosphatase (EC:3.6.1.1)
Putative K(+)-stimulated pyrophosphate-energized sodium pump n=1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=B8CYF6_HALOH
Displaying 29 items

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