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rifcsplowo2_02_scaffold_2554

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_02_scaffold_2554_1
R_RIF_OD1_09_51_11, RIF-OD1-9, Parcubacteria, Bacteria

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210..479
-----------------
DNA (270bp)
protein (90aa)
Uncharacterized protein n=1 Tax=Cyclobacteriaceae bacterium AK24 RepID=R7ZNP2_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_RIF_OD1_09_51_11_curated
hypothetical protein
rifcsplowo2_02_scaffold_2554_2

Not on your lists

comp(565..795)
-----------------
DNA (231bp)
protein (77aa)
Putative uncharacterized protein n=1 Tax=sediment metagenome RepID=D9PJB7_9ZZZZ
Marine sediment metagenome DNA, contig: S06H3_S00525 {ECO:0000313|EMBL:GAI26278.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
rifcsplowo2_02_scaffold_2554_3
Fervidobacterium nodosum, Fervidobacterium, Thermotogales, Thermotogae, Thermotogae, Bacteria

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1102..1506
-----------------
DNA (405bp)
protein (135aa)
Putative uncharacterized protein id=2933723 bin=GWC1_Spirochaetes_27_15 species=Desulfurispirillum indicum genus=Desulfurispirillum taxon_order=Chrysiogenales taxon_class=Chrysiogenetes phylum=Chrysiogenetes tax=GWC1_Spirochaetes_27_15 organism_group=Spirochaetes
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS59905.1}; TaxID=381764 species="Bacteria; Thermotogae; Thermotogales; Fervidobacteriaceae; Fervidobacterium.;" source="Fervidobacterium nodosum (strain ATC
rifcsplowo2_02_scaffold_2554_4

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comp(1477..1947)
-----------------
DNA (471bp)
protein (157aa)
Uncharacterized protein id=5041729 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Uncharacterized protein {ECO:0000313|EMBL:KHO47981.1}; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
hypothetical protein
rifcsplowo2_02_scaffold_2554_5
CG_Pacearch_03, Pacearchaeota, Archaea

Not on your lists

comp(2056..2613)
-----------------
DNA (558bp)
protein (186aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00035E1242
LemA family protein; K03744 LemA protein Tax=CG_Pacearch_03
LemA protein
rifcsplowo2_02_scaffold_2554_6
R_Omnitrophica_44_11, Omnitrophica, Bacteria

Not on your lists

comp(2635..8397)
-----------------
DNA (5763bp)
protein (1921aa)
Putative uncharacterized protein n=1 Tax=Tetrahymena thermophila (strain SB210) RepID=Q23ZC1_TETTS
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Omnitrophica_44_11_curated
Large exoproteins involved in heme utilization or adhesion
rifcsplowo2_02_scaffold_2554_7
RIFOXYB2_FULL_PER_ii_54_17_curated, PER-ii, Bacteria

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comp(8394..10568)
-----------------
DNA (2175bp)
protein (725aa)
hypothetical protein Tax=RIFOXYB2_FULL_PER_ii_54_17_curated
Rhs family protein id=5043762 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsplowo2_02_scaffold_2554_8
unknown

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10612..10962
-----------------
DNA (351bp)
protein (117aa)

This feature has no annotations

rifcsplowo2_02_scaffold_2554_9
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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11013..11465
-----------------
DNA (453bp)
protein (151aa)
Tax=RBG_13_Pacearchaeota_36_9_curated
rifcsplowo2_02_scaffold_2554_10
AR13, Pacearchaeaota, DPANN, Archaea

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comp(11404..13023)
-----------------
DNA (1620bp)
protein (540aa)
Parallel beta-helix repeat protein Tax=AR13
rifcsplowo2_02_scaffold_2554_11
RBG_13_Pacearchaeota_33_26_curated, Pacearchaeota, DPANN, Archaea

Not on your lists


13307..13615
-----------------
DNA (309bp)
protein (103aa)
rps10p; 30S ribosomal protein S10P; K02946 small subunit ribosomal protein S10 Tax=RBG_13_Pacearchaeota_33_26_curated
rps10p; 30S ribosomal protein S10P; K02946 small subunit ribosomal protein S10 id=5043693 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rps10p; 30S ribosomal protein S10
rifcsplowo2_02_scaffold_2554_12
unknown

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13624..13932
-----------------
DNA (309bp)
protein (103aa)

This feature has no annotations

rifcsplowo2_02_scaffold_2554_13
Candidatus Methanomassiliicoccus intestinalis, Methanomassiliicoccus, Methanomassiliicoccales, Thermoplasmata, Euryarchaeota, Archaea

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comp(14268..14630)
-----------------
DNA (363bp)
protein (121aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI0003621456
Fe-S oxidoreductase
Fe-S oxidoreductase {ECO:0000313|EMBL:AGN25649.1}; TaxID=1295009 species="Archaea; Euryarchaeota; Thermoplasmata; Methanomassiliicoccales; Methanomassiliicoccaceae; Methanomassiliicoccus.;" source="Ca
rifcsplowo2_02_scaffold_2554_14
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

comp(14620..15957)
-----------------
DNA (1338bp)
protein (446aa)
(S)-2-hydroxy-acid dehydrogenase (EC:1.1.3.15); K00104 glycolate oxidase [EC:1.1.3.15] Tax=RBG_13_Woesearchaeota_36_6_curated
Putative glycolate oxidase, subunit GlcD n=1 Tax=Clostridium symbiosum ATCC 14940 RepID=U2CVM4_CLOSY
FAD/FMN-containing dehydrogenase
rifcsplowo2_02_scaffold_2554_15
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists

comp(15954..16493)
-----------------
DNA (540bp)
protein (180aa)
HIT family hydrolase, diadenosine tetraphosphate hydrolase Tax=CG_Pacearch_05
histidine triad (HIT) protein id=137236 bin=ACD8 species=ACD8 genus=ACD8 taxon_order=ACD8 taxon_class=ACD8 phylum=OD1-i tax=ACD8 organism_group=OD1-i organism_desc=OD1-i
rifcsplowo2_02_scaffold_2554_16
CG_Aenigma_01, Aenigmaarchaeota, Archaea

Not on your lists

comp(16486..17325)
-----------------
DNA (840bp)
protein (280aa)
CoB--CoM heterodisulfide reductase (EC:1.8.98.1) Tax=CG_Aenigma_01
CoB--CoM heterodisulfide reductase (EC:1.8.98.1)
Fe-S oxidoreductase n=1 Tax=Desulfotomaculum gibsoniae DSM 7213 RepID=R4KLW6_9FIRM
rifcsplowo2_02_scaffold_2554_17

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comp(17392..17844)
-----------------
DNA (453bp)
protein (151aa)
hypothetical protein
id=5103499 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Uncharacterized protein {ECO:0000313|EMBL:AJF62780.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsplowo2_02_scaffold_2554_trna_1
unknown

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18018..18092
-----------------
DNA (75bp)
transferRNA
rifcsplowo2_02_scaffold_2554_18
unknown

Not on your lists

18195..18323
-----------------
DNA (129bp)
protein (43aa)

This feature has no annotations

rifcsplowo2_02_scaffold_2554_19
unknown

Not on your lists

18325..18504
-----------------
DNA (180bp)
protein (60aa)

This feature has no annotations

rifcsplowo2_02_scaffold_2554_20
unknown

Not on your lists

comp(18521..18793)
-----------------
DNA (273bp)
protein (91aa)

This feature has no annotations

rifcsplowo2_02_scaffold_2554_21
unknown

Not on your lists

comp(18803..18976)
-----------------
DNA (174bp)
protein (58aa)

This feature has no annotations

rifcsplowo2_02_scaffold_2554_22
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists

comp(19437..19745)
-----------------
DNA (309bp)
protein (103aa)
DNA-directed RNA polymerase subunit n=1 Tax=nanoarchaeote Nst1 RepID=R1E3Q9_9ARCH
transcription termination factor Tfs; K03057 transcription elongation factor Tax=CG_Pacearch_05
transcription termination factor Tfs
rifcsplowo2_02_scaffold_2554_23
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(19832..20503)
-----------------
DNA (672bp)
protein (224aa)
id=5103328 Tax=RBG_13_Pacearchaeota_36_9_curated
Peptidase S26B, eukaryotic signal peptidase id=5799718 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsplowo2_02_scaffold_2554_24
unknown

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comp(20546..20929)
-----------------
DNA (384bp)
protein (128aa)

This feature has no annotations

rifcsplowo2_02_scaffold_2554_25
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(21014..22621)
-----------------
DNA (1608bp)
protein (536aa)
RecJ-like exonuclease (DnaJ-type Zn finger protein); K07463 archaea-specific RecJ-like exonuclease Tax=RBG_13_Pacearchaeota_36_9_curated
RecJ-like exonuclease (DnaJ-type Zn finger protein) id=3795705 bin=GWF2_Lentisphaerae_38_69 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_38_69 organism_group=Lentisphaerae organism_desc=a349 rbh
RecJ-like exonuclease (DnaJ-type Zn finger protein)
Displaying 26 items

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