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rifcsplowo2_02_scaffold_3031

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_02_scaffold_3031_trna_1
unknown

Not on your lists

1518..1597
-----------------
DNA (80bp)
transferRNA
rifcsplowo2_02_scaffold_3031_1
unknown

Not on your lists

comp(1831..2478)
-----------------
DNA (648bp)
protein (216aa)

This feature has no annotations

rifcsplowo2_02_scaffold_3031_2

Not on your lists

2839..3936
-----------------
DNA (1098bp)
protein (366aa)
Filamentation induced by cAMP protein Fic n=1 Tax=Methanoplanus limicola DSM 2279 RepID=H1YZU4_9EURY id=5103798 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Filamentation induced by cAMP protein Fic
Filamentation induced by cAMP protein Fic {ECO:0000313|EMBL:AJF63076.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsplowo2_02_scaffold_3031_3

Not on your lists

3933..5492
-----------------
DNA (1560bp)
protein (520aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. HPS0048 RepID=U6RBB3_9BACE
Marine sediment metagenome DNA, contig: S03H2_L07352 {ECO:0000313|EMBL:GAH40886.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
rifcsplowo2_02_scaffold_3031_4
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(5632..5910)
-----------------
DNA (279bp)
protein (93aa)
Tax=RBG_13_Pacearchaeota_36_9_curated
rifcsplowo2_02_scaffold_3031_5
CG_Pacearch_04, Pacearchaeota, Archaea

Not on your lists

comp(6246..7988)
-----------------
DNA (1743bp)
protein (581aa)
sodium/hydrogen exchanger Tax=CG_Pacearch_04
Transporter, CPA2 family id=5799540 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
sodium/hydrogen exchanger
rifcsplowo2_02_scaffold_3031_6
CG_Pacearch_03, Pacearchaeota, Archaea

Not on your lists

comp(8125..9600)
-----------------
DNA (1476bp)
protein (492aa)
thymidine phosphorylase (EC:2.4.2.4); K00758 thymidine phosphorylase [EC:2.4.2.4] Tax=CG_Pacearch_03
AMP phosphohydrolase; K00758 thymidine phosphorylase [EC:2.4.2.4] id=5043588 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
AMP phosphorylase
rifcsplowo2_02_scaffold_3031_7
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(9607..10653)
-----------------
DNA (1047bp)
protein (349aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00036CCA3F
hypothetical protein Tax=RBG_13_Pacearchaeota_36_9_curated
membrane protein
rifcsplowo2_02_scaffold_3031_8
unknown

Not on your lists

10774..11172
-----------------
DNA (399bp)
protein (133aa)

This feature has no annotations

rifcsplowo2_02_scaffold_3031_9
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(11240..11905)
-----------------
DNA (666bp)
protein (222aa)
RNA polymerase insert; K03047 DNA-directed RNA polymerase subunit D [EC:2.7.7.6] Tax=RBG_13_Pacearchaeota_36_9_curated
DNA-directed RNA polymerase subunit D id=5799890 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
DNA-directed RNA polymerase subunit D
rifcsplowo2_02_scaffold_3031_10
CG_Pacearch_01, Pacearchaeota, Archaea

Not on your lists


comp(12062..12511)
-----------------
DNA (450bp)
protein (150aa)
30S ribosomal protein S11 n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=RS11_METKA
rps11p; 30S ribosomal protein S11; K02948 small subunit ribosomal protein S11 Tax=CG_Pacearch_01
rps11p; 30S ribosomal protein S11
rifcsplowo2_02_scaffold_3031_11
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists


comp(12515..13045)
-----------------
DNA (531bp)
protein (177aa)
30S ribosomal protein S4 n=1 Tax=Methanobacterium sp. MB1 RepID=U6ECF9_9EURY
30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 Tax=RBG_13_Pacearchaeota_36_9_curated
rps4; 30S ribosomal protein S4
rifcsplowo2_02_scaffold_3031_12
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists


comp(13179..13658)
-----------------
DNA (480bp)
protein (160aa)
rps13p; 30S ribosomal protein S13P; K02952 small subunit ribosomal protein S13 Tax=RBG_13_Pacearchaeota_36_9_curated
30S ribosomal protein S13P id=5799893 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
30S ribosomal protein S13
rifcsplowo2_02_scaffold_3031_13
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(13696..14232)
-----------------
DNA (537bp)
protein (179aa)
hypothetical protein; K07572 putative nucleotide binding protein Tax=RBG_13_Pacearchaeota_36_9_curated
hypothetical protein; K07572 putative nucleotide binding protein id=5051518 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
DNA-binding protein
rifcsplowo2_02_scaffold_3031_14
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(14244..14528)
-----------------
DNA (285bp)
protein (95aa)
Conserved protein Tax=RBG_13_Pacearchaeota_36_9_curated
rifcsplowo2_02_scaffold_3031_15
unknown

Not on your lists

comp(14650..14763)
-----------------
DNA (114bp)
protein (38aa)

This feature has no annotations

rifcsplowo2_02_scaffold_3031_16
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists


comp(14760..15011)
-----------------
DNA (252bp)
protein (84aa)
50S ribosomal protein L21e; K02889 large subunit ribosomal protein L21e Tax=RBG_13_Pacearchaeota_36_9_curated
50S ribosomal protein L21e
rifcsplowo2_02_scaffold_3031_17
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(15248..15415)
-----------------
DNA (168bp)
protein (56aa)
Tax=RBG_13_Pacearchaeota_36_9_curated
rifcsplowo2_02_scaffold_3031_18

Not on your lists

15537..16469
-----------------
DNA (933bp)
protein (311aa)
Putative uncharacterized protein n=1 Tax=uncultured archaeon RepID=D1JAJ1_9ARCH
Putative uncharacterized protein {ECO:0000313|EMBL:CBH39121.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
integrase
rifcsplowo2_02_scaffold_3031_19
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists

16662..18296
-----------------
DNA (1635bp)
protein (545aa)
hypothetical protein Tax=CG_Pacearch_05
virulence plasmid protein B id=5047412 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
rifcsplowo2_02_scaffold_3031_20
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists

18387..22145
-----------------
DNA (3759bp)
protein (1253aa)
hypothetical protein Tax=CG_Pacearch_05
virulence plasmid protein B id=5047412 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
Displaying 21 items

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