ggKbase home page

rifcsplowo2_02_scaffold_13341

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_02_scaffold_13341_1
Desulfovibrio sp. U5L, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

229..654
-----------------
DNA (426bp)
protein (142aa)
HRDC domain-containing protein {ECO:0000313|EMBL:EIG52021.1}; TaxID=596152 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Des
rifcsplowo2_02_scaffold_13341_2
unknown

Not on your lists

comp(997..1395)
-----------------
DNA (399bp)
protein (133aa)

This feature has no annotations

rifcsplowo2_02_scaffold_13341_3
GWD2_OD1_38_42, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(1856..2452)
-----------------
DNA (597bp)
protein (199aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037A46E1
Transcriptional regulator, TrmB {ECO:0000313|EMBL:KKQ72637.1}; TaxID=1618637 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Falkowbacteria) bacterium GW2011_GWD2_38_42.;"
sugar-specific transcriptional regulator TrmB family protein
rifcsplowo2_02_scaffold_13341_4
unknown

Not on your lists

2549..3310
-----------------
DNA (762bp)
protein (254aa)

This feature has no annotations

rifcsplowo2_02_scaffold_13341_5

Not on your lists

3618..3992
-----------------
DNA (375bp)
protein (125aa)
transmembrane_regions 7..28 id=86730 bin=ACD58 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
Uncharacterized protein {ECO:0000313|EMBL:EKD56826.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
rifcsplowo2_02_scaffold_13341_6
unknown

Not on your lists

comp(3976..4692)
-----------------
DNA (717bp)
protein (239aa)
Chromosome segregation and condensation protein ScpA n=1 Tax=Candidatus Parvarchaeum acidophilus ARMAN-5 RepID=D6GVZ3_9EURY id=5103660 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Chromosome segregation and condensation protein ScpA n=1 Tax=Candidatus Parvarchaeum acidophilus ARMAN-5 RepID=D6GVZ3_9EURY Tax=AR20
Chromosome segregation and condensation protein ScpA
rifcsplowo2_02_scaffold_13341_7
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

comp(4730..5077)
-----------------
DNA (348bp)
protein (116aa)
transcriptional modulator of MazE/toxin MazF Tax=CG_Pacearch_06
MazF family transcriptional regulator id=5049700 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
transcriptional modulator of MazE/toxin MazF
rifcsplowo2_02_scaffold_13341_8
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

comp(5059..5286)
-----------------
DNA (228bp)
protein (76aa)
Tax=CG_Pacearch_06
rifcsplowo2_02_scaffold_13341_9
unknown

Not on your lists

comp(5427..5990)
-----------------
DNA (564bp)
protein (188aa)
DNA-binding protein n=3 Tax=Pyrococcus RepID=Q8TZW3_PYRFU id=5103692 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
DNA-binding protein n=3 Tax=Pyrococcus RepID=Q8TZW3_PYRFU Tax=AR20
DNA-binding protein
rifcsplowo2_02_scaffold_13341_10

Not on your lists

comp(6021..6350)
-----------------
DNA (330bp)
protein (110aa)
Conserved protein n=2 Tax=Methanothermobacter RepID=O27379_METTH id=5103693 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJF62971.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsplowo2_02_scaffold_13341_11
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists


comp(6352..6642)
-----------------
DNA (291bp)
protein (97aa)
ASCG--Ribosomal--protein--L21e
50S ribosomal protein L21; K02889 large subunit ribosomal protein L21e Tax=CG_Woesearch_02
LSU ribosomal protein L21E id=5799708 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
50S ribosomal protein L21e
rifcsplowo2_02_scaffold_13341_12
AR20, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(6681..7019)
-----------------
DNA (339bp)
protein (113aa)
hypothetical protein
id=5103695 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Tax=AR20
rifcsplowo2_02_scaffold_13341_13
unknown

Not on your lists

comp(7091..8722)
-----------------
DNA (1632bp)
protein (544aa)
Histone acetyltransferase Elp3 like protein n=2 Tax=Thermococcus RepID=C6A5G3_THESM id=5103697 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Histone acetyltransferase Elp3 like protein n=2 Tax=Thermococcus RepID=C6A5G3_THESM Tax=AR20
Histone acetyltransferase Elp3 like protein
rifcsplowo2_02_scaffold_13341_14
unknown

Not on your lists

8809..9126
-----------------
DNA (318bp)
protein (106aa)

This feature has no annotations

rifcsplowo2_02_scaffold_13341_15
unknown

Not on your lists

9172..10752
-----------------
DNA (1581bp)
protein (527aa)
Thermosome, chaperonin Cpn60/TCP-1 n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MRK6_9EURY id=5103700 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Thermosome, chaperonin Cpn60/TCP-1 n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MRK6_9EURY Tax=AR20
Thermosome, chaperonin Cpn60/TCP-1
rifcsplowo2_02_scaffold_13341_16
unknown

Not on your lists

10753..10956
-----------------
DNA (204bp)
protein (68aa)

This feature has no annotations

rifcsplowo2_02_scaffold_13341_17
AR20, Woesearchaeaota, DPANN, Archaea

Not on your lists

10997..11320
-----------------
DNA (324bp)
protein (108aa)
hypothetical protein
id=5103702 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Tax=AR20
rifcsplowo2_02_scaffold_13341_18
unknown

Not on your lists

11317..11805
-----------------
DNA (489bp)
protein (163aa)

This feature has no annotations

Displaying 18 items

View Taxonomy