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rifcsplowo2_02_scaffold_50344

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_02_scaffold_50344_1
AR17, Woesearchaeaota, DPANN, Archaea

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comp(1..147)
-----------------
DNA (147bp)
protein (49aa)
30S ribosomal protein S2 n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037B6F74
30S ribosomal protein S2; K02967 small subunit ribosomal protein S2 Tax=AR17
30S ribosomal protein S2
rifcsplowo2_02_scaffold_50344_2
unknown

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comp(216..896)
-----------------
DNA (681bp)
protein (227aa)
Conserved TM helix repeat-containing protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TDU5_9CHLR id=5102941 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Conserved TM helix repeat-containing protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TDU5_9CHLR Tax=AR20
Conserved TM helix repeat-containing protein
rifcsplowo2_02_scaffold_50344_3
unknown

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comp(1000..1794)
-----------------
DNA (795bp)
protein (265aa)
Ribosomal RNA-processing protein RRP42 n=1 Tax=Archaeoglobus sulfaticallidus PM70-1 RepID=N0BIN3_9EURY id=5103846 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Ribosomal RNA-processing protein RRP42 n=1 Tax=Archaeoglobus sulfaticallidus PM70-1 RepID=N0BIN3_9EURY Tax=AR20
Ribosomal RNA-processing protein RRP42
rifcsplowo2_02_scaffold_50344_4

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comp(1787..2485)
-----------------
DNA (699bp)
protein (233aa)
exosome complex exonuclease Rrp41 n=1 Tax=Thermococcus zilligii AN1 RepID=UPI000299EC77 id=5103845 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
exosome complex exonuclease Rrp41
Exosome complex exonuclease Rrp41 {ECO:0000313|EMBL:AJF63123.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsplowo2_02_scaffold_50344_5
unknown

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comp(2482..3153)
-----------------
DNA (672bp)
protein (224aa)
Probable exosome complex RNA-binding protein 1 n=1 Tax=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) RepID=ECR1_PYRKO id=5103844 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Probable exosome complex RNA-binding protein 1 n=1 Tax=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) RepID=ECR1_PYRKO Tax=AR20
putative exosome complex RNA-binding protein 1
rifcsplowo2_02_scaffold_50344_6
unknown

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comp(3165..3860)
-----------------
DNA (696bp)
protein (232aa)
ASCG--Ribosome--maturation--protein--SDO1--homolog
Ribosome maturation protein SDO1 homolog n=4 Tax=Methanocaldococcus RepID=SDO1_METJA id=5103843 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Ribosome maturation protein SDO1 homolog n=4 Tax=Methanocaldococcus RepID=SDO1_METJA Tax=AR20
Ribosome maturation protein SDO1-like protein
rifcsplowo2_02_scaffold_50344_7

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comp(3863..4582)
-----------------
DNA (720bp)
protein (240aa)
Proteasome subunit alpha {ECO:0000256|HAMAP-Rule:MF_00289}; EC=3.4.25.1 {ECO:0000256|HAMAP-Rule:MF_00289};; 20S proteasome alpha subunit {ECO:0000256|HAMAP-Rule:MF_00289}; Proteasome core protein PsmA
Proteasome subunit alpha n=3 Tax=Thermococcus RepID=PSA_THESM id=5103842 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Proteasome subunit alpha
rifcsplowo2_02_scaffold_50344_8

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comp(4582..4929)
-----------------
DNA (348bp)
protein (116aa)
ribonuclease P protein component 2 (EC:3.1.26.5); K03537 ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5] id=5045732 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
ribonuclease P (EC:3.1.26.5)
Marine sediment metagenome DNA, contig: S01H1_S10576 {ECO:0000313|EMBL:GAG03138.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
rifcsplowo2_02_scaffold_50344_9

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comp(5006..5263)
-----------------
DNA (258bp)
protein (86aa)
Marine sediment metagenome DNA, contig: S12H4_L00838 {ECO:0000313|EMBL:GAI81119.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
Cold shock protein; K03704 cold shock protein (beta-ribbon, CspA family) id=5041610 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Cold shock protein
rifcsplowo2_02_scaffold_50344_10
Methanococcoides burtonii, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(5297..6535)
-----------------
DNA (1239bp)
protein (413aa)
Dead box RNA helicase n=2 Tax=Methanococcoides burtonii RepID=Q12UP5_METBU
DEAD/DEAH box helicase-like protein
DEAD-box RNA helicase {ECO:0000313|EMBL:AAF89099.1}; TaxID=29291 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanococcoides.;" source="Methanococcoides b
rifcsplowo2_02_scaffold_50344_11
CG_Pacearch_05, Pacearchaeota, Archaea

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comp(6648..7424)
-----------------
DNA (777bp)
protein (259aa)
YARS; tyrosyl-tRNA synthetase; K01866 tyrosyl-tRNA synthetase [EC:6.1.1.1] Tax=CG_Pacearch_05
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Predicted protein n=1 Tax=Nematostella vectensis RepID=A7SV20_NEMVE
Displaying 11 items

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