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RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_10394

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_10394_1
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(3..983)
DNA (981bp) protein (327aa)
murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; K01925 UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; K01925 UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] id=14625507 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_10394_2
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(985..2019)
DNA (1035bp) protein (345aa)
mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase (EC:2.7.8.13); K01000 phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase; K01000 phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] id=14625508 bin=bin7_NC10_sister species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase (EC:2.7.8.13)
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_10394_3
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(2023..3048)
DNA (1026bp) protein (342aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC:6.3.2.10); K01929 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_cu
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC:6.3.2.10); K01929 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] id=14625509 bin=bin7_NC10_sister species=Anaeromyxobacter dehalogenans genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC:6.3.2.10)
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_10394_4
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(3396..4895)
DNA (1500bp) protein (500aa)
murE; UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (EC:6.3.2.13) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
murE; UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (EC:6.3.2.13) id=14625510 bin=bin7_NC10_sister species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
murE; UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (EC:6.3.2.13)
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_10394_5
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(4892..6856)
DNA (1965bp) protein (655aa)
peptidoglycan glycosyltransferase (EC:2.4.1.129); K03587 cell division protein FtsI (penicillin-binding protein 3) [EC:2.4.1.129] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
peptidoglycan glycosyltransferase (EC:2.4.1.129)
Peptidoglycan synthetase FtsI id=3884431 bin=GWF2_Methylomirabilis_70_14 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_10394_6
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(6985..7389)
DNA (405bp) protein (135aa)
id=4599618 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
id=4599618 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_10394_7
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(7376..8293)
DNA (918bp) protein (306aa)
S-adenosyl-methyltransferase MraW; K03438 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
S-adenosyl-methyltransferase MraW id=3884428 bin=GWF2_Methylomirabilis_70_14 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
S-adenosyl-methyltransferase MraW
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_10394_8
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(8299..8742)
DNA (444bp) protein (148aa)
MraZ protein; K03925 MraZ protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Protein MraZ id=4599612 bin=GWC2_Methylomirabilis_70_16 species=ACD73 genus=ACD73 taxon_order=ACD73 taxon_class=ACD73 phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
cell division protein MraZ
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_10394_9
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(9141..9536)
DNA (396bp) protein (132aa)
Fis family two component sigma-54 specific transcriptional regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_c
response regulator receiver protein id=14625231 bin=bin7_NC10_sister species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=bin7_NC10_sister organism_group=NC10
Fis family two component sigma-54 specific transcriptional regulator
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_10394_10
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(9565..10518)
DNA (954bp) protein (318aa)
Aldehyde Dehydrogenase; K00294 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.1.12] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Aldehyde Dehydrogenase n=1 Tax=Methanofollis liminatans DSM 4140 RepID=J1L386_9EURY
Aldehyde Dehydrogenase
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_10394_11
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(11151..11945)
DNA (795bp) protein (265aa)
peptidase M48, Ste24p Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Peptidase M48, Ste24p id=4599610 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
peptidase M48, Ste24p
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_10394_12
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(11979..12677)
DNA (699bp) protein (233aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
hypothetical protein id=4953741 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_10394_13
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(12685..14187)
DNA (1503bp) protein (501aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
hypothetical protein id=14626881 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_10394_14
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(14202..14963)
DNA (762bp) protein (254aa)
Tfp pilus assembly protein PilW-like; K02672 type IV pilus assembly protein PilW Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Type II secretory pathway component PulJ-like id=4953738 bin=GWA2_Methylomirabilis_73_35 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tfp pilus assembly protein PilW-like
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_10394_15
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(14975..15436)
DNA (462bp) protein (154aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
hypothetical protein id=4953737 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_10394_16
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(15641..16189)
DNA (549bp) protein (183aa)
Putative uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Putative uncharacterized protein id=4599608 bin=GWC2_Methylomirabilis_70_16 species=delta proteobacterium MLMS-1 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_10394_17
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(16453..17346)
DNA (894bp) protein (298aa)
3-hydroxyacyl-CoA dehydrogenase (EC:1.1.1.35); K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
3-hydroxyacyl-CoA dehydrogenase (EC:1.1.1.35)
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WTI2_KYRT2
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_10394_18
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(17495..18907)
DNA (1413bp) protein (471aa)
amidase; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Amidase id=4599606 bin=GWC2_Methylomirabilis_70_16 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
amidase
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_10394_19
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(18979..20397)
DNA (1419bp) protein (473aa)
aldehyde-dehydrogenase-like protein y4uC (EC:1.2.1.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
aldehyde-dehydrogenase-like protein y4uC (EC:1.2.1.-)
Putative aldehyde-dehydrogenase-like protein y4uC n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MIR4_9BACT
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_10394_20
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(20578..21426)
DNA (849bp) protein (283aa)
peptide ABC transporter permease; K02034 peptide/nickel transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Peptide ABC transporter permease protein id=4775215 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
peptide ABC transporter permease
Displaying 20 items

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