ggKbase home page

RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1878

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1878_1
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(1..1224)
DNA (1224bp) protein (408aa)
Protoporphyrinogen oxidase n=1 Tax=Beggiatoa alba B18LD RepID=I3CIG8_9GAMM
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
FAD dependent oxidoreductase family protein
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1878_2
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(1221..2255)
DNA (1035bp) protein (345aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00035DA92B
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
hypothetical protein
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1878_3
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(2236..3246)
DNA (1011bp) protein (337aa)
spsJ2; dTDP-glucose 4,6-dehydratase (EC:4.2.1.46) Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
dTDP-glucose 4,6-dehydratase, dTDP-glucose 4,6-dehydratase (EC:4.2.1.46)
dTDP-glucose 4,6-dehydratase n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XWB4_9BACT
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1878_4
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(3243..3962)
DNA (720bp) protein (240aa)
glucose-1-phosphate thymidylyltransferase (EC:2.7.7.24); K00973 glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Nucleotidyl transferase n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DLZ1_9BACL
spore coat protein
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1878_5
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(3959..4666)
DNA (708bp) protein (236aa)
Ribonuclease PH (EC:2.7.7.56) Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Ribonuclease PH (EC:2.7.7.56)
ribonuclease PH n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI00036B0DC6
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1878_6
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(4663..5106)
DNA (444bp) protein (148aa)
Putative uncharacterized protein n=1 Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9RAL2_AMMDK
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
hypothetical protein
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1878_7
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(5121..5588)
DNA (468bp) protein (156aa)
Phosphopantetheine adenylyltransferase; K00954 pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Phosphopantetheine adenylyltransferase (EC:2.7.7.3)
Phosphopantetheine adenylyltransferase n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S326_THEOJ
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1878_8
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(5563..5838)
DNA (276bp) protein (92aa)
Methyltransferase n=4 Tax=Thermoanaerobacter RepID=E1T1B1_THESX
putative methyltransferase Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
putative methyltransferase
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1878_9
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(6050..8086)
DNA (2037bp) protein (679aa)
ATP-dependent DNA helicase RecG; K03655 ATP-dependent DNA helicase RecG [EC:3.6.4.12] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
ATP-dependent DNA helicase RecG n=1 Tax=Thermincola potens (strain JR) RepID=D5X8R8_THEPJ
ATP-dependent DNA helicase RecG
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1878_10
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists


8174..8365
DNA (192bp) protein (64aa)
50S ribosomal protein L28 n=1 Tax=Hippea alviniae RepID=UPI0003B5F6FE
50S ribosomal protein L28 ; K02902 large subunit ribosomal protein L28 Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
50S ribosomal protein L28
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1878_11
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(8362..8835)
DNA (474bp) protein (158aa)
Flagellar export protein FliJ Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Flagellar export protein FliJ id=1817875 bin=GWD2_RBX1-related_39_127 species=Acetohalobium arabaticum genus=Acetohalobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
flagellar export protein FliJ
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1878_12
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(8852..10162)
DNA (1311bp) protein (437aa)
ATPase, FliI/YscN family (EC:3.6.3.14); K02412 flagellum-specific ATP synthase [EC:3.6.3.14] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
ATPase, FliI/YscN family (EC:3.6.3.14); K02412 flagellum-specific ATP synthase [EC:3.6.3.14] id=24609101 bin=RAAC11 species=Selenomonas flueggei genus=Selenomonas taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=RAAC11 organism_group=Unknown_CP
ATPase, FliI/YscN family (EC:3.6.3.14)
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1878_13
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(10171..10833)
DNA (663bp) protein (221aa)
flagellar assembly protein FliH/type III secretion system HrpE; K02411 flagellar assembly protein FliH Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
flagellar biosynthesis/type III secretory pathway protein-like protein id=1959950 bin=GWE2_RBX1_39_32 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
flagellar assembly protein FliH/type III secretion system HrpE
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1878_14
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(10836..11303)
DNA (468bp) protein (156aa)
id=1959948 Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
id=1959948 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1878_15
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(11305..12831)
DNA (1527bp) protein (509aa)
Flagellar M-ring protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HN42_9FIRM
fliF; flagellar M-ring protein FliF; K02409 flagellar M-ring protein FliF Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
fliF; flagellar M-ring protein FliF
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1878_16
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(12847..13203)
DNA (357bp) protein (119aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1878_17
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(13218..13655)
DNA (438bp) protein (146aa)
Flagellar basal-body rod protein FlgC n=10 Tax=Thermoanaerobacter RepID=B0K1T3_THEPX
flagellar basal-body rod protein FlgC; K02388 flagellar basal-body rod protein FlgC Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
flagellar basal-body rod protein FlgC
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1878_18
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(13663..13962)
DNA (300bp) protein (100aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1878_19
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(13955..14683)
DNA (729bp) protein (243aa)
RNA polymerase sigma factor n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S3A9_THEOJ
FliA/WhiG subfamily RNA polymerase sigma-28 subunit; K02405 RNA polymerase sigma factor for flagellar operon FliA Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
FliA/WhiG subfamily RNA polymerase sigma-28 subunit
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1878_20
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(14680..14982)
DNA (303bp) protein (101aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1878_21
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(14982..16088)
DNA (1107bp) protein (369aa)
flgI; flagellar basal body P-ring protein; K02394 flagellar P-ring protein precursor FlgI Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Flagellar P-ring protein id=1817828 bin=GWD2_RBX1-related_39_127 species=Acetonema longum genus=Acetonema taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
flgI; flagellar P-ring protein FlgI
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1878_22
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(16099..16686)
DNA (588bp) protein (196aa)
flagellar basal body L-ring protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Flagellar L-ring protein id=1959919 bin=GWE2_RBX1_39_32 species=Halobacteroides halobius genus=Halobacteroides taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
flagellar basal body L-ring protein
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1878_23
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(16683..17387)
DNA (705bp) protein (235aa)
Flagellar basal body P-ring biosynthesis protein FlgA n=1 Tax=Pseudomonas stutzeri MF28 RepID=U3HS24_PSEST
flgA; flagellar basal body P-ring biosynthesis protein FlgA; K02386 flagella basal body P-ring formation protein FlgA Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
flagellar basal body P-ring biosynthesis protein FlgA
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1878_24
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(17387..18184)
DNA (798bp) protein (266aa)
flagellar basal-body rod protein FlgG; K02392 flagellar basal-body rod protein FlgG Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Flagellar basal-body rod protein FlgG id=1959910 bin=GWE2_RBX1_39_32 species=Halothermothrix orenii genus=Halothermothrix taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
flagellar basal-body rod protein FlgG
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1878_25
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(18197..18931)
DNA (735bp) protein (245aa)
flagellar basal-body rod protein FlgF; K02392 flagellar basal-body rod protein FlgG Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
flagellar basal-body rod protein FlgF
Flagellar basal-body rod protein FlgF id=1817807 bin=GWD2_RBX1-related_39_127 species=unknown genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1878_26
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(18980..19321)
DNA (342bp) protein (114aa)
flhb domain protein; K04061 flagellar biosynthesis protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
flagellar biosynthesis protein id=1959901 bin=GWE2_RBX1_39_32 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
flhb domain protein
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1878_27
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(19325..20596)
DNA (1272bp) protein (424aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1878_28
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists


comp(20674..21444)
DNA (771bp) protein (257aa)
50S ribosomal protein L25; K02897 large subunit ribosomal protein L25 Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; K02897 large subunit ribosomal protein L25 id=1249730 bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
50S ribosomal protein L25
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1878_29
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(21488..23335)
DNA (1848bp) protein (616aa)
hypothetical protein n=1 Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI000362CD5B
cell elongation specific D,D-transpeptidase; K05515 penicillin-binding protein 2 Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
cell elongation specific D,D-transpeptidase
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1878_30
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(23328..23801)
DNA (474bp) protein (158aa)
rod shape-determining protein; K03571 rod shape-determining protein MreD Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
rod shape-determining protein
Displaying items 1-30 of 36 in total

View Taxonomy