ggKbase home page

RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_5511

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_5511_1
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

1..714
-----------------
DNA (714bp)
protein (238aa)
thrS; threonyl-tRNA synthetase (EC:6.1.1.3); K01868 threonyl-tRNA synthetase [EC:6.1.1.3] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
thrS; threonyl-tRNA synthetase (EC:6.1.1.3)
Threonine--tRNA ligase n=1 Tax=Nitrospina gracilis 3/211 RepID=M1YWM3_9BACT
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_5511_2
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

842..1255
-----------------
DNA (414bp)
protein (138aa)
Translation initiation factor IF-3 n=2 Tax=Sulfobacillus acidophilus RepID=G8TWG9_SULAD
translation initiation factor 3 (bIF-3); K02520 translation initiation factor IF-3 Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
infC; translation initiation factor IF-3
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_5511_3
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists


1268..1468
-----------------
DNA (201bp)
protein (67aa)
50S ribosomal protein L35 n=1 Tax=Anaeromusa acidaminophila RepID=UPI000375C18C
50S ribosomal protein L35; K02916 large subunit ribosomal protein L35 Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
50S ribosomal protein L35
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_5511_4
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists


1472..1822
-----------------
DNA (351bp)
protein (117aa)
50S ribosomal protein L20 n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GJX4_9FUSO
rplT; 50S ribosomal protein L20; K02887 large subunit ribosomal protein L20 Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
rplT; 50S ribosomal protein L20
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_5511_5
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

1819..2307
-----------------
DNA (489bp)
protein (163aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Uncharacterized protein id=2149123 bin=GWD2_RBX1-related_39_127 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
hypothetical protein
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_5511_6
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(2308..2667)
-----------------
DNA (360bp)
protein (120aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Putative membrane protein id=2030924 bin=GWD2_RBX1-related_39_127 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
hypothetical protein
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_5511_7
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(2678..3133)
-----------------
DNA (456bp)
protein (152aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_5511_8
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(3135..3551)
-----------------
DNA (417bp)
protein (139aa)
Putative uncharacterized protein n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RI83_MOOTA
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
hypothetical protein
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_5511_9
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(3551..3841)
-----------------
DNA (291bp)
protein (97aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_5511_10
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(3867..4238)
-----------------
DNA (372bp)
protein (124aa)
Pilin assembly protein n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LVV8_SYNAS
pilin assembly protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
pilin assembly protein
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_5511_11
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(4235..5083)
-----------------
DNA (849bp)
protein (283aa)
Pantothenate synthetase; K01918 pantoate--beta-alanine ligase [EC:6.3.2.1] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
pantoate--beta-alanine ligase (EC:6.3.2.1); K01918 pantoate--beta-alanine ligase [EC:6.3.2.1] id=1249863 bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
Pantothenate synthetase
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_5511_12
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(5181..7346)
-----------------
DNA (2166bp)
protein (722aa)
DNA topoisomerase I; K03168 DNA topoisomerase I [EC:5.99.1.2] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
DNA topoisomerase id=4740786 bin=GWC2_Nitrospirae_57_13 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
DNA topoisomerase I
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_5511_13
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(7554..9242)
-----------------
DNA (1689bp)
protein (563aa)
DNA mismatch repair protein MutL n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S3G9_THEOJ
DNA mismatch repair protein MutL; K03572 DNA mismatch repair protein MutL Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
DNA mismatch repair protein MutL
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_5511_14
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(9257..10198)
-----------------
DNA (942bp)
protein (314aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_5511_15
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(10220..11254)
-----------------
DNA (1035bp)
protein (345aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_5511_16
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(11294..11869)
-----------------
DNA (576bp)
protein (192aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00037003C0
MAF protein; K06287 septum formation protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
MAF protein
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_5511_17
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(11845..12327)
-----------------
DNA (483bp)
protein (161aa)
phosphohistidine phosphatase SixA; K08296 phosphohistidine phosphatase [EC:3.1.3.-] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Phosphohistidine phosphatase SixA n=1 Tax=Legionella pneumophila (strain Corby) RepID=A5IDG9_LEGPC
Phosphohistidine phosphatase SixA
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_5511_18
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(12347..13294)
-----------------
DNA (948bp)
protein (316aa)
aminoglycoside phosphotransferase Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
aminoglycoside phosphotransferase id=24609817 bin=RAAC11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RAAC11 organism_group=Unknown_CP
aminoglycoside phosphotransferase
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_5511_19
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

13356..14900
-----------------
DNA (1545bp)
protein (515aa)
hypothetical protein; K07137 Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Uncharacterized protein Cbei_0202 id=4487247 bin=GWF2_Lentisphaerae_50_93 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
hypothetical protein
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_5511_20
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

14951..15970
-----------------
DNA (1020bp)
protein (340aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_5511_21
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

16049..17161
-----------------
DNA (1113bp)
protein (371aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_5511_22
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

17222..18568
-----------------
DNA (1347bp)
protein (449aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_5511_23
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(18647..18973)
-----------------
DNA (327bp)
protein (109aa)
DNA polymerase beta domain protein region Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
DNA polymerase beta domain protein region id=4213786 bin=GWC2_OP3_44_8 species=Caldicellulosiruptor bescii genus=Caldicellulosiruptor taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_5511_24
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(18952..19353)
-----------------
DNA (402bp)
protein (134aa)
HEPN domain protein n=1 Tax=Bacteroidetes bacterium oral taxon 272 str. F0290 RepID=S8FG47_9BACT
HEPN domain-containing protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
HEPN domain-containing protein
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_5511_25
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

19473..20054
-----------------
DNA (582bp)
protein (194aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_5511_26
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

20150..20971
-----------------
DNA (822bp)
protein (274aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
hypothetical protein id=5050168 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_5511_27
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

21262..21387
-----------------
DNA (126bp)
protein (42aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_5511_trna_1
unknown

Not on your lists

comp(21353..21435)
-----------------
DNA (83bp)
transferRNA
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_5511_28
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(21562..21687)
-----------------
DNA (126bp)
protein (42aa)
hypothetical protein n=1 Tax=Marinimicrobia bacterium JGI 0000039-D08 RepID=UPI00039F57D5
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_5511_29
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(21694..22203)
-----------------
DNA (510bp)
protein (170aa)
TrmH family RNA methyltransferase; K03218 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
RNA methyltransferase n=1 Tax=Clostridium sp. CAG:273 RepID=R7L9M7_9CLOT
TrmH family RNA methyltransferase
Displaying items 1-30 of 32 in total

View Taxonomy