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RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_6101

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_6101_1
R_WOR_1_46_20, WOR-1, Bacteria

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comp(1..1467)
-----------------
DNA (1467bp)
protein (489aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037001CA
collagen-like protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
triple helix repeat-containing collagen
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_6101_2
R_WOR_1_46_20, WOR-1, Bacteria

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1673..1891
-----------------
DNA (219bp)
protein (73aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_6101_3
R_WOR_1_46_20, WOR-1, Bacteria

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1895..2473
-----------------
DNA (579bp)
protein (193aa)
RNA polymerase sigma factor Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
RNA polymerase sigma factor id=1750195 bin=GWE2_RBX1_39_32 species=Eubacterium ventriosum genus=Eubacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_6101_trna_3
unknown

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comp(2632..2705)
-----------------
DNA (74bp)
transferRNA
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_6101_trna_2
unknown

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comp(2811..2881)
-----------------
DNA (71bp)
transferRNA
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_6101_trna_1
unknown

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comp(2887..2958)
-----------------
DNA (72bp)
transferRNA
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_6101_4
R_WOR_1_46_20, WOR-1, Bacteria

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3065..5065
-----------------
DNA (2001bp)
protein (667aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_6101_5
R_WOR_1_46_20, WOR-1, Bacteria

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5055..6200
-----------------
DNA (1146bp)
protein (382aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Putative uncharacterized protein id=4014155 bin=GWA2_CPR4_42_17 species=GWA2_OP11 genus=GWA2_OP11 taxon_order=GWA2_OP11 taxon_class=GWA2_OP11 phylum=OP11 tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
hypothetical protein
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_6101_6
R_WOR_1_46_20, WOR-1, Bacteria

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6243..6530
-----------------
DNA (288bp)
protein (96aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_6101_7
R_WOR_1_46_20, WOR-1, Bacteria

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6527..7972
-----------------
DNA (1446bp)
protein (482aa)
Putative collagen triple helix repeat protein n=1 Tax=Clostridium ljungdahlii (strain ATCC 55383 / DSM 13528 / PETC) RepID=D8GI95_CLOLD
similar to putative extensin precursor Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Collagen triple helix repeat-containing protein
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_6101_8
R_WOR_1_46_20, WOR-1, Bacteria

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7987..8736
-----------------
DNA (750bp)
protein (250aa)
Glycosyltransferases involved in cell wall biogenesis (EC:2.4.1.117) Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Glycosyltransferases involved in cell wall biogenesis (EC:2.4.1.117)
Conserved hypothtical protein id=4850462 bin=GWC2_Planctomycete_KSU_39_26 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Planctomycete_KSU_39_26 organism_group=Planctomycetes
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_6101_9
R_WOR_1_46_20, WOR-1, Bacteria

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8778..9557
-----------------
DNA (780bp)
protein (260aa)
dihydroorotate dehydrogenase, electron transfer subunit; K02823 dihydroorotate dehydrogenase electron transfer subunit Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit id=4202415 bin=GWF2_OP3_43_52 species=Acetohalobium arabaticum genus=Acetohalobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
pyrK; dihydroorotate dehydrogenase, electron transfer subunit
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_6101_10
R_WOR_1_46_20, WOR-1, Bacteria

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9545..10453
-----------------
DNA (909bp)
protein (303aa)
dihydroorotate dehydrogenase, catalytic subunit (EC:1.3.3.1); K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Dihydroorotate dehydrogenase id=4903757 bin=GWC2_Deltaproteobacteria_42_51 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
dihydroorotate dehydrogenase
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_6101_11
R_WOR_1_46_20, WOR-1, Bacteria

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comp(10433..12058)
-----------------
DNA (1626bp)
protein (542aa)
CTP synthase; K01937 CTP synthase [EC:6.3.4.2] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
CTP synthase (EC:6.3.4.2)
CTP synthase id=1808676 bin=GWD2_RBX1-related_39_127 species=unknown genus=Thermoanaerobacterium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_6101_12
R_WOR_1_46_20, WOR-1, Bacteria

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comp(12055..13332)
-----------------
DNA (1278bp)
protein (426aa)
Putative uncharacterized protein n=1 Tax=Acetohalobium arabaticum (strain ATCC 49924 / DSM 5501 / Z-7288) RepID=D9QVA3_ACEAZ
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
hypothetical protein
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_6101_13
R_WOR_1_46_20, WOR-1, Bacteria

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comp(13334..13684)
-----------------
DNA (351bp)
protein (117aa)
diacylglycerol kinase; K00901 diacylglycerol kinase [EC:2.7.1.107] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
diacylglycerol kinase n=1 Tax=Paenibacillus sp. JC66 RepID=UPI000289A509
diacylglycerol kinase
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_6101_14
R_WOR_1_46_20, WOR-1, Bacteria

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comp(13656..13940)
-----------------
DNA (285bp)
protein (95aa)
Endoribonuclease YbeY n=1 Tax=Aquifex aeolicus (strain VF5) RepID=YBEY_AQUAE
hypothetical protein; K07042 probable rRNA maturation factor Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
hypothetical protein
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_6101_15
R_WOR_1_46_20, WOR-1, Bacteria

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comp(13991..15247)
-----------------
DNA (1257bp)
protein (419aa)
murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase; K00790 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC:2.5.1.7)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase id=1808622 bin=GWD2_RBX1-related_39_127 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_6101_16
R_WOR_1_46_20, WOR-1, Bacteria

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comp(15244..16407)
-----------------
DNA (1164bp)
protein (388aa)
putative UDP-N-acetylglucosamine 2-epimerase (EC:5.1.3.14); K01791 UDP-N-acetylglucosamine 2-epimerase [EC:5.1.3.14] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
putative UDP-N-acetylglucosamine 2-epimerase (EC:5.1.3.14)
UDP-N-acetylglucosamine 2-epimerase n=1 Tax=Selenomonas ruminantium subsp. lactilytica (strain NBRC 103574 / TAM6421) RepID=I0GU50_SELRL
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_6101_17
R_WOR_1_46_20, WOR-1, Bacteria

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comp(16404..17357)
-----------------
DNA (954bp)
protein (318aa)
glycosyl transferase family protein; K13685 UDP-N-acetylglucosamine:undecaprenyl-P N-acetylglucosaminyl 1-P transferase [EC:2.7.8.-] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Glycosyl transferase family 4 n=1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=B8CZ21_HALOH
glycosyl transferase family protein
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_6101_18
R_WOR_1_46_20, WOR-1, Bacteria

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comp(17413..18603)
-----------------
DNA (1191bp)
protein (397aa)
peptidase U32; K08303 putative protease [EC:3.4.-.-] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Peptidase, U32 family id=1774314 bin=GWD2_RBX1-related_39_127 species=Filifactor alocis genus=Filifactor taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
peptidase U32
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_6101_19
R_WOR_1_46_20, WOR-1, Bacteria

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18645..19016
-----------------
DNA (372bp)
protein (124aa)
Putative uncharacterized protein n=1 Tax=Bacillus smithii 7_3_47FAA RepID=G9QID4_9BACI
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
eamA-like transporter family protein
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_6101_20
R_WOR_1_46_20, WOR-1, Bacteria

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19156..20718
-----------------
DNA (1563bp)
protein (521aa)
Glycosylase n=1 Tax=Beggiatoa sp. PS RepID=A7BQB9_9GAMM
Predicted glycosylase Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Predicted glycosylase
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_6101_21
R_WOR_1_46_20, WOR-1, Bacteria

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20715..20888
-----------------
DNA (174bp)
protein (58aa)
prophage antirepressor Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Putative uncharacterized protein id=3382921 bin=GWC2_Planctomycetes_45_44 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Planctomycetes_45_44 organism_group=Planctomycetes organism_desc=Novel; good
conserved protein of unknown function
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_6101_22
R_WOR_1_46_20, WOR-1, Bacteria

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comp(21053..21964)
-----------------
DNA (912bp)
protein (304aa)
hypothetical protein n=1 Tax=Omnitrophica bacterium SCGC AAA252-B19 RepID=UPI0003640F64
filamentation induced by cAMP protein fic Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
filamentation induced by cAMP protein fic
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_6101_23
R_WOR_1_46_20, WOR-1, Bacteria

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22158..23252
-----------------
DNA (1095bp)
protein (365aa)
cell filamentation protein Fic n=1 Tax=Parcubacteria bacterium SCGC AAA011-N16 RepID=UPI0003B608F6
Fic family protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Fic family protein
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_6101_24
R_WOR_1_46_20, WOR-1, Bacteria

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comp(23297..23440)
-----------------
DNA (144bp)
protein (48aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Displaying 27 items

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