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RIFCSPLOWO2_02_FULL_OD1_50_19_rifcsplowo2_02_scaffold_9308

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_02_FULL_OD1_50_19_rifcsplowo2_02_scaffold_9308_1
RLO_WOR_2_51_24, WOR-2, Bacteria

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247..1416
-----------------
DNA (1170bp)
protein (390aa)
Diguanylate cyclase id=4155072 bin=GWC2_OP3_44_8 species=Halothermothrix orenii genus=Halothermothrix taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
diguanylate cyclase
Tax=RIFCSPLOWO2_12_FULL_WOR_2_51_24_curated
RIFCSPLOWO2_02_FULL_OD1_50_19_rifcsplowo2_02_scaffold_9308_2
RLO_WOR_2_51_24, WOR-2, Bacteria

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comp(1427..4969)
-----------------
DNA (3543bp)
protein (1181aa)
Chromosome partition protein Smc n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XDT2_9BACT
chromosome segregation protein SMC
Tax=RIFCSPLOWO2_12_FULL_WOR_2_51_24_curated
RIFCSPLOWO2_02_FULL_OD1_50_19_rifcsplowo2_02_scaffold_9308_3
RLO_WOR_2_51_24, WOR-2, Bacteria

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comp(5094..6917)
-----------------
DNA (1824bp)
protein (608aa)
General secretion pathway protein D id=3706853 bin=GWF2_OP3_43_52 species=unknown genus=Aeromonas taxon_order=Aeromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
type II and III secretion system protein
Tax=RIFCSPLOWO2_12_FULL_WOR_2_51_24_curated
RIFCSPLOWO2_02_FULL_OD1_50_19_rifcsplowo2_02_scaffold_9308_4
RLO_WOR_2_51_24, WOR-2, Bacteria

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comp(6933..7625)
-----------------
DNA (693bp)
protein (231aa)
id=3706852 bin=GWF2_OP3_43_52 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
Tax=RIFCSPLOWO2_12_FULL_WOR_2_51_24_curated
RIFCSPLOWO2_02_FULL_OD1_50_19_rifcsplowo2_02_scaffold_9308_5
RLO_WOR_2_51_24, WOR-2, Bacteria

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comp(7625..8440)
-----------------
DNA (816bp)
protein (272aa)
Phage tail X family protein id=4308610 bin=GWA2_OP3_53_43 species=Desulfovibrio vulgaris genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
type II secretory pathway component ExeA
Tax=RIFCSPLOWO2_12_FULL_WOR_2_51_24_curated
RIFCSPLOWO2_02_FULL_OD1_50_19_rifcsplowo2_02_scaffold_9308_6
RLO_WOR_2_51_24, WOR-2, Bacteria

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comp(8437..8682)
-----------------
DNA (246bp)
protein (82aa)
Transcriptional regulator, MerR family id=4297216 bin=GWF2_OP3_38_59 species=Anaerotruncus colihominis genus=Anaerotruncus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP3_38_59 organism_group=OP3 (Omnitrophica) organism_desc=a159
Tax=RIFCSPLOWO2_12_FULL_WOR_2_51_24_curated
RIFCSPLOWO2_02_FULL_OD1_50_19_rifcsplowo2_02_scaffold_9308_7
RLO_WOR_2_51_24, WOR-2, Bacteria

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comp(8750..9283)
-----------------
DNA (534bp)
protein (178aa)
hypothetical protein id=4494113 bin=GWA2_OP3_53_43 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
Tax=RIFCSPLOWO2_12_FULL_WOR_2_51_24_curated
RIFCSPLOWO2_02_FULL_OD1_50_19_rifcsplowo2_02_scaffold_9308_8
RLO_WOR_2_51_24, WOR-2, Bacteria

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comp(9280..10713)
-----------------
DNA (1434bp)
protein (478aa)
id=3706836 bin=GWF2_OP3_43_52 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
pilM; putative type IV pilus assembly protein PilM
Tax=RIFCSPLOWO2_12_FULL_WOR_2_51_24_curated
RIFCSPLOWO2_02_FULL_OD1_50_19_rifcsplowo2_02_scaffold_9308_9
RLO_WOR_2_51_24, WOR-2, Bacteria

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comp(10718..11674)
-----------------
DNA (957bp)
protein (319aa)
Probable general secretion pathway protein k id=4553176 bin=GWC2_OP3_44_8 species=ACD79 genus=ACD79 taxon_order=ACD79 taxon_class=ACD79 phylum=Clamydiae tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
Tax=RIFCSPLOWO2_12_FULL_WOR_2_51_24_curated
RIFCSPLOWO2_02_FULL_OD1_50_19_rifcsplowo2_02_scaffold_9308_10
RLO_WOR_2_51_24, WOR-2, Bacteria

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comp(11678..12256)
-----------------
DNA (579bp)
protein (193aa)
hypothetical protein n=1 Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B49FAD
Tax=RIFCSPLOWO2_12_FULL_WOR_2_51_24_curated
RIFCSPLOWO2_02_FULL_OD1_50_19_rifcsplowo2_02_scaffold_9308_11
RLO_WOR_2_51_24, WOR-2, Bacteria

Not on your lists

comp(12264..12650)
-----------------
DNA (387bp)
protein (129aa)
Tax=RIFCSPLOWO2_12_FULL_WOR_2_51_24_curated
RIFCSPLOWO2_02_FULL_OD1_50_19_rifcsplowo2_02_scaffold_9308_12
RLO_WOR_2_51_24, WOR-2, Bacteria

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comp(12625..13194)
-----------------
DNA (570bp)
protein (190aa)
Pilus assembly protein id=4474234 bin=GWC2_OP3-like_45_7 species=Thioalkalivibrio nitratireducens genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_OP3-like_45_7 organism_group=OP3 (Omnitrophica)
Tax=RIFCSPLOWO2_12_FULL_WOR_2_51_24_curated
RIFCSPLOWO2_02_FULL_OD1_50_19_rifcsplowo2_02_scaffold_9308_13
RLO_WOR_2_51_24, WOR-2, Bacteria

Not on your lists

comp(13136..13543)
-----------------
DNA (408bp)
protein (136aa)
general secretion pathway protein G n=1 Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B63CA6
gspG; pseudopilin, cryptic, general secretion pathway
Tax=RIFCSPLOWO2_12_FULL_WOR_2_51_24_curated
RIFCSPLOWO2_02_FULL_OD1_50_19_rifcsplowo2_02_scaffold_9308_14
RLO_WOR_2_51_24, WOR-2, Bacteria

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comp(13562..14779)
-----------------
DNA (1218bp)
protein (406aa)
General secretion pathway protein F id=3690257 bin=GWC2_OP3_44_8 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
gspF2; protein GspF2
Tax=RIFCSPLOWO2_12_FULL_WOR_2_51_24_curated
RIFCSPLOWO2_02_FULL_OD1_50_19_rifcsplowo2_02_scaffold_9308_15
RLO_WOR_2_51_24, WOR-2, Bacteria

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comp(14797..15498)
-----------------
DNA (702bp)
protein (234aa)
Putative General secretion pathway protein E (Type II traffic warden ATPase) id=3706773 bin=GWF2_OP3_43_52 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
general secretory pathway protein E
Tax=RIFCSPLOWO2_12_FULL_WOR_2_51_24_curated
Displaying 15 items

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