ggKbase home page

RIFCSPLOWO2_02_FULL_OD1_50_19_rifcsplowo2_02_scaffold_11344

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_02_FULL_OD1_50_19_rifcsplowo2_02_scaffold_11344_1
RLO_WOR_2_51_24, WOR-2, Bacteria

Not on your lists

comp(3..920)
-----------------
DNA (918bp)
protein (306aa)
Pyruvate ferredoxin oxidoreductase beta subunit id=1832575 bin=GWB2_CP_45_9 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
pyruvate:ferredoxin oxidoreductase beta subunit
Tax=RIFCSPLOWO2_12_FULL_WOR_2_51_24_curated
RIFCSPLOWO2_02_FULL_OD1_50_19_rifcsplowo2_02_scaffold_11344_2
RLO_WOR_2_51_24, WOR-2, Bacteria

Not on your lists

comp(921..2102)
-----------------
DNA (1182bp)
protein (394aa)
2-ketoisovalerate ferredoxin oxidoreductase subunit alpha n=1 Tax=Orenia marismortui RepID=UPI0003746106
2-oxoacid:ferredoxin oxidoreductase, alpha subunit
Tax=RIFCSPLOWO2_12_FULL_WOR_2_51_24_curated
RIFCSPLOWO2_02_FULL_OD1_50_19_rifcsplowo2_02_scaffold_11344_3
RLO_WOR_2_51_24, WOR-2, Bacteria

Not on your lists

comp(2099..2407)
-----------------
DNA (309bp)
protein (103aa)
pyruvate ferredoxin oxidoreductase subunit delta (EC:1.2.7.1)
Putative uncharacterized protein n=1 Tax=uncultured candidate division JS1 bacterium RepID=G3BMN9_9BACT
Tax=RIFCSPLOWO2_12_FULL_WOR_2_51_24_curated
RIFCSPLOWO2_02_FULL_OD1_50_19_rifcsplowo2_02_scaffold_11344_4
RLO_WOR_2_51_24, WOR-2, Bacteria

Not on your lists

comp(2409..2981)
-----------------
DNA (573bp)
protein (191aa)
pyruvate ferredoxin oxidoreductase subunit gamma (EC:1.2.7.1)
Putative uncharacterized protein n=1 Tax=uncultured candidate division JS1 bacterium RepID=G3BMN8_9BACT
Tax=RIFCSPLOWO2_12_FULL_WOR_2_51_24_curated
RIFCSPLOWO2_02_FULL_OD1_50_19_rifcsplowo2_02_scaffold_11344_5
RLO_WOR_2_51_24, WOR-2, Bacteria

Not on your lists

comp(2965..3675)
-----------------
DNA (711bp)
protein (237aa)
Tax=RIFCSPLOWO2_12_FULL_WOR_2_51_24_curated
RIFCSPLOWO2_02_FULL_OD1_50_19_rifcsplowo2_02_scaffold_11344_6
RLO_WOR_2_51_24, WOR-2, Bacteria

Not on your lists

comp(3744..4346)
-----------------
DNA (603bp)
protein (201aa)
recombinase RecR n=1 Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B5C134
Recombination protein recR
Tax=RIFCSPLOWO2_12_FULL_WOR_2_51_24_curated
RIFCSPLOWO2_02_FULL_OD1_50_19_rifcsplowo2_02_scaffold_11344_7
RLO_WOR_2_51_24, WOR-2, Bacteria

Not on your lists

comp(4351..5955)
-----------------
DNA (1605bp)
protein (535aa)
DNA polymerase III subunits gamma and tau (EC:2.7.7.7)
DNA polymerase III, subunits gamma and tau n=1 Tax=Thermincola potens (strain JR) RepID=D5X8W4_THEPJ
Tax=RIFCSPLOWO2_12_FULL_WOR_2_51_24_curated
RIFCSPLOWO2_02_FULL_OD1_50_19_rifcsplowo2_02_scaffold_11344_8
RLO_WOR_2_51_24, WOR-2, Bacteria

Not on your lists

comp(6022..7488)
-----------------
DNA (1467bp)
protein (489aa)
Radical SAM domain protein n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XQC7_METZD
radical SAM protein
Tax=RIFCSPLOWO2_12_FULL_WOR_2_51_24_curated
RIFCSPLOWO2_02_FULL_OD1_50_19_rifcsplowo2_02_scaffold_11344_9
GWF2_Lentisphaerae_38_69_curated, Lentisphaerae, Bacteria

Not on your lists

comp(7481..8965)
-----------------
DNA (1485bp)
protein (495aa)
Putative Fe-S oxidoreductase id=3512993 bin=GWF2_Lentisphaerae_38_69 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_38_69 organism_group=Lentisphaerae organism_desc=a349
putative Fe-S oxidoreductase Tax=GWF2_Lentisphaerae_38_69_curated
putative Fe-S oxidoreductase
RIFCSPLOWO2_02_FULL_OD1_50_19_rifcsplowo2_02_scaffold_11344_10
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8971..10035)
-----------------
DNA (1065bp)
protein (355aa)
Lipoprotein, putative n=1 Tax=Pseudomonas aeruginosa (strain PA7) RepID=A6V302_PSEA7
hypothetical protein
Lipoprotein, putative {ECO:0000313|EMBL:ABR82825.1}; TaxID=381754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aerugino
RIFCSPLOWO2_02_FULL_OD1_50_19_rifcsplowo2_02_scaffold_11344_trna_2
unknown

Not on your lists

comp(10038..10127)
-----------------
DNA (90bp)
transferRNA
RIFCSPLOWO2_02_FULL_OD1_50_19_rifcsplowo2_02_scaffold_11344_11
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(10114..10590)
-----------------
DNA (477bp)
protein (159aa)
cytosine deaminase Tax=CG_Omnitr_03
CMP/dCMP deaminase zinc-binding id=3833364 bin=GWF2_OP3_43_52 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
CMP/dCMP deaminase zinc-binding protein
RIFCSPLOWO2_02_FULL_OD1_50_19_rifcsplowo2_02_scaffold_11344_trna_1
unknown

Not on your lists

comp(10782..10855)
-----------------
DNA (74bp)
transferRNA
RIFCSPLOWO2_02_FULL_OD1_50_19_rifcsplowo2_02_scaffold_11344_12

Not on your lists

comp(10909..11589)
-----------------
DNA (681bp)
protein (227aa)
Methyltransferase domain protein n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VS49_CLOBI
Uncharacterized protein {ECO:0000313|EMBL:KKN02560.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
RIFCSPLOWO2_02_FULL_OD1_50_19_rifcsplowo2_02_scaffold_11344_13
GWA2_WOR_2_47_8_curated, WOR-2, Bacteria

Not on your lists

comp(11614..12111)
-----------------
DNA (498bp)
protein (166aa)
hypothetical protein ; K09767 hypothetical protein Tax=GWA2_WOR_2_47_8_curated
UPF0234 protein TGRD_519 id=2882738 bin=GWF2_OP3_43_52 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
hypothetical protein
RIFCSPLOWO2_02_FULL_OD1_50_19_rifcsplowo2_02_scaffold_11344_14
Trichomonas vaginalis, Trichomonas, Trichomonadida, Eukaryota

Not on your lists

comp(12144..13337)
-----------------
DNA (1194bp)
protein (398aa)
Ankyrin repeat protein n=1 Tax=Ophiostoma piceae (strain UAMH 11346) RepID=S3CZK7_OPHP1
Ankyrin repeat protein, putative {ECO:0000313|EMBL:EAY16890.1}; TaxID=5722 species="Eukaryota; Parabasalia; Trichomonadida; Trichomonadidae; Trichomonas.;" source="Trichomonas vaginalis.;"
ankyrin repeat domain protein
RIFCSPLOWO2_02_FULL_OD1_50_19_rifcsplowo2_02_scaffold_11344_15
CG_Omnitr_06, Omnitrophica, Bacteria

Not on your lists

comp(13445..15265)
-----------------
DNA (1821bp)
protein (607aa)
GTP-binding protein TypA n=2 Tax=Bacteria RepID=D8P868_9BACT
typA; GTP-binding protein TypA; K06207 GTP-binding protein Tax=CG_Omnitr_06
typA; GTP-binding protein TypA
RIFCSPLOWO2_02_FULL_OD1_50_19_rifcsplowo2_02_scaffold_11344_16
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(15282..16025)
-----------------
DNA (744bp)
protein (248aa)
zinc/iron permease Tax=CG_Omnitr_03
Zinc transporter, ZIP family
Zinc/iron permease id=2194114 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
RIFCSPLOWO2_02_FULL_OD1_50_19_rifcsplowo2_02_scaffold_11344_17
Ammonifex degensii, Ammonifex, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16094..17152)
-----------------
DNA (1059bp)
protein (353aa)
Arsenical-resistance protein n=1 Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9R9N8_AMMDK
arsenical-resistance protein
Arsenical-resistance protein {ECO:0000313|EMBL:ACX53017.1}; TaxID=429009 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Ammonifex.;" source
RIFCSPLOWO2_02_FULL_OD1_50_19_rifcsplowo2_02_scaffold_11344_18
RBG_13_OP3X_46_9_curated, OP3X, Bacteria

Not on your lists

comp(17133..18755)
-----------------
DNA (1623bp)
protein (541aa)
Radical SAM domain protein n=1 Tax=Caldivirga maquilingensis (strain ATCC 700844 / DSM 13496 / JCM 10307 / IC-167) RepID=A8MDS2_CALMQ
radical SAM protein Tax=RBG_13_OP3X_46_9_curated
radical SAM domain-containing protein
RIFCSPLOWO2_02_FULL_OD1_50_19_rifcsplowo2_02_scaffold_11344_19
unknown

Not on your lists

comp(18758..18955)
-----------------
DNA (198bp)
protein (66aa)

This feature has no annotations

Displaying 21 items

View Taxonomy