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RIFCSPLOWO2_02_FULL_Pseudomonas_63_210_rifcsplowo2_02_scaffold_259294_5

Organism: Pseudomonadales bacterium RIFCSPLOWO2_02_FULL_63_210

partial RP 38 / 55 MC: 6 BSCG 40 / 51 MC: 6 ASCG 6 / 38 MC: 3
Location: 2475..3011

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-54 factor n=1 Tax=Pseudomonas fulva (strain 12-X) RepID=F6AEZ2_PSEF1 similarity UNIREF
DB: UNIREF100
  • Identity: 85.5
  • Coverage: 179.0
  • Bit_score: 320
  • Evalue 1.30e-84
RNA polymerase sigma 54 subunit RpoN; K03092 RNA polymerase sigma-54 factor Tax=RIFCSPLOWO2_02_FULL_Pseudomonas_63_210_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 179.0
  • Bit_score: 366
  • Evalue 1.70e-98
RNA polymerase sigma 54 subunit RpoN similarity KEGG
DB: KEGG
  • Identity: 85.5
  • Coverage: 179.0
  • Bit_score: 320
  • Evalue 3.70e-85

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Taxonomy

R_Pseudomonas_63_210 → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 537
ATGAAACCATCGCTAGTCCTGAAAATGGGCCAGCAGCTGACGATGACCCCGCAGCTGCAACAGGCCATTCGCCTACTCCAATTGTCTACCCTGGATCTGCAGCAAGAGATCCAGGAGGCCCTGGAGTCCAACCCGATGCTCGAGCGCGAAGAAGACGGTGACGACTTCGACAACTCGAATCCCCTGGCCGACGGCGCCGAAAACCAGGTGCCCACCCCTCAGCAGGAAGAGTCCTACCAGGACAACAGCCACCAGGAAACCCCACAGACCGTGGACAACCTGGAAGAGGGCGAATGGAACGAACGCATTCCCAACGAACTGCCGGTCGACACCGCCTGGGAAGACGTCTACCAGACCAGCGCCAGCAGCCTGCCGAGCAACGACGATGACGAGTGGGACTTCACTACCCGCACCTCGTCTGGCGAGAGCCTGCAGAGTCACCTGCTCTGGCAGCTCAATCTGGTGCCGATGTCCGACAAGGATCGGCTGATCGGGGTCACCCTGATCGACTGCATCAACTATCAGGGCTATCTGGAA
PROTEIN sequence
Length: 179
MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLEREEDGDDFDNSNPLADGAENQVPTPQQEESYQDNSHQETPQTVDNLEEGEWNERIPNELPVDTAWEDVYQTSASSLPSNDDDEWDFTTRTSSGESLQSHLLWQLNLVPMSDKDRLIGVTLIDCINYQGYLE