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rifcsplowo2_12_scaffold_5319

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_12_scaffold_5319_1
AR11, Woesearchaeaota, DPANN, Archaea

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3..434
-----------------
DNA (432bp)
protein (144aa)
Protein archease n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GYA7_METFV id=5103007 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Putative uncharacterized protein Tax=AR11
Protein archease
rifcsplowo2_12_scaffold_5319_2
R_Planctomycetes_50_16, Planctomycetes, Bacteria

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496..825
-----------------
DNA (330bp)
protein (110aa)
Putative uncharacterized protein n=1 Tax=Cryptomonas paramecium RepID=F2HIC1_9CRYP
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Planctomycetes_50_16_curated
hypothetical protein
rifcsplowo2_12_scaffold_5319_3

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835..1728
-----------------
DNA (894bp)
protein (298aa)
Probable lipoyl synthase {ECO:0000256|HAMAP-Rule:MF_00206}; EC=2.8.1.8 {ECO:0000256|HAMAP-Rule:MF_00206};; Lip-syn {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoate synthase {ECO:0000256|HAMAP-Rule:MF_00206}
Probable lipoyl synthase id=5799637 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized rbh
hypothetical protein
rifcsplowo2_12_scaffold_5319_4

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1905..2972
-----------------
DNA (1068bp)
protein (356aa)
pyruvate dehydrogenase E1 component subunit alpha (EC:1.2.4.4 1.2.4.1)
Pyruvate dehydrogenase E1 component subunit alpha id=5799638 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized rbh
Pyruvate dehydrogenase E1 component subunit alpha {ECO:0000313|EMBL:AJF60969.1}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
rifcsplowo2_12_scaffold_5319_5

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2965..3939
-----------------
DNA (975bp)
protein (325aa)
transketolase (EC:1.2.4.1)
Transketolase central region id=5799639 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized rbh
Transketolase central region {ECO:0000313|EMBL:AJF60970.1}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
rifcsplowo2_12_scaffold_5319_6

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4047..5300
-----------------
DNA (1254bp)
protein (418aa)
pyruvate dehydrogenase E2 component dihydrolipoamide acetyltransferase (EC:2.3.1.12)
Branched-chain 2-oxoacid dehydrogenase complex, E2 protein, dihydrolipoamide acyltransferase, putative id=5799640 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized rbh
Uncharacterized protein {ECO:0000313|EMBL:AJF60971.1}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
rifcsplowo2_12_scaffold_5319_7
unknown

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5370..6212
-----------------
DNA (843bp)
protein (281aa)

This feature has no annotations

rifcsplowo2_12_scaffold_5319_8
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(6260..7018)
-----------------
DNA (759bp)
protein (253aa)
putative biotin/lipoate A/B protein ligase; K03800 lipoate-protein ligase A [EC:2.7.7.63] Tax=RBG_16_Euryarchaeota_41_19_curated
Lipoate-protein ligase A (EC:2.7.7.63)
Lipoate-protein ligase A, C-terminal id=5799643 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsplowo2_12_scaffold_5319_9
GWA1_Berkelbacteria_36_10, Berkelbacteria, Bacteria

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comp(7073..7321)
-----------------
DNA (249bp)
protein (83aa)
id=5046581 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Tax=GWA1_Berkelbacteria_36_10
rifcsplowo2_12_scaffold_5319_10
AR5, Aenigmarchaeota, DPANN, Archaea

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comp(7387..7845)
-----------------
DNA (459bp)
protein (153aa)
thiol-specific antioxidant protein id=18248451 bin=AR5_curated_draft species=Leptospirillum sp. Group II '5-way CG' genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
thiol-specific antioxidant protein Tax=AR5
thiolspecific antioxidant protein
rifcsplowo2_12_scaffold_5319_11

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comp(8002..8589)
-----------------
DNA (588bp)
protein (196aa)
Iron-sulfur cluster assembly accessory protein n=2 Tax=Waddlia chondrophila RepID=D6YW49_WADCW id=5103548 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Iron-sulfur cluster assembly accessory protein
Iron-sulfur cluster assembly accessory protein {ECO:0000313|EMBL:AJF62829.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsplowo2_12_scaffold_5319_12
AR10, Diapherotrites, DPANN, Archaea

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comp(8726..9331)
-----------------
DNA (606bp)
protein (202aa)
superoxide dismutase, Fe-Mn family (EC:1.15.1.1)
Superoxide dismutase (EC:1.15.1.1); K04564 superoxide dismutase, Fe-Mn family [EC:1.15.1.1] id=5240906 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10 rbh
Superoxide dismutase (EC:1.15.1.1); K04564 superoxide dismutase, Fe-Mn family [EC:1.15.1.1] Tax=AR10
rifcsplowo2_12_scaffold_5319_13
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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9552..9725
-----------------
DNA (174bp)
protein (58aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037944A6
hypothetical protein Tax=RBG_13_Pacearchaeota_36_9_curated
hypothetical protein
rifcsplowo2_12_scaffold_5319_14

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10070..10498
-----------------
DNA (429bp)
protein (143aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KHO52163.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
id=5048513 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsplowo2_12_scaffold_5319_15
AR11, Woesearchaeaota, DPANN, Archaea

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10552..11190
-----------------
DNA (639bp)
protein (213aa)
hypothetical protein Tax=AR11
hypothetical protein id=5042245 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
rifcsplowo2_12_scaffold_5319_16
AR11, Woesearchaeaota, DPANN, Archaea

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comp(11234..11758)
-----------------
DNA (525bp)
protein (175aa)
hypothetical protein
transmembrane_regions id=5800310 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Tax=AR11
rifcsplowo2_12_scaffold_5319_17
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(11767..12369)
-----------------
DNA (603bp)
protein (201aa)
transmembrane_regions id=5042247 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Tax=AR11
rifcsplowo2_12_scaffold_5319_18
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(12423..12965)
-----------------
DNA (543bp)
protein (181aa)
hypothetical protein
transmembrane_regions Tax=RBG_13_Woesearchaeota_36_6_curated
transmembrane_regions id=5042248 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsplowo2_12_scaffold_5319_19

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13276..13845
-----------------
DNA (570bp)
protein (190aa)
hypothetical protein id=5047338 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Uncharacterized protein {ECO:0000313|EMBL:KHO54116.1}; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
translin
rifcsplowo2_12_scaffold_5319_20
CG_Woesearch_02, Woesearchaeota, Archaea

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13842..14693
-----------------
DNA (852bp)
protein (284aa)
aspS; aspartyl-tRNA synthetase (EC:6.1.1.12); K01876 aspartyl-tRNA synthetase [EC:6.1.1.12] Tax=CG_Woesearch_02
aspartyl-tRNA synthetase (EC:6.1.1.12)
Aspartate--tRNA ligase id=5799880 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Displaying 20 items

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