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RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_8907

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_8907_1
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

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1..279
DNA (279bp) protein (93aa)
HhH-GPD; K01247 DNA-3-methyladenine glycosylase II [EC:3.2.2.21] Tax=RBG_16_Betaproteobacteria_64_18_curated
Putative DNA-3-methyladenine glycosylase n=1 Tax=Candidatus Glomeribacter gigasporarum BEG34 RepID=G2J9L9_9BURK
HhH-GPD family protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_8907_2
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

362..1345
DNA (984bp) protein (328aa)
accA; acetyl-CoA carboxylase carboxyltransferase subunit alpha (EC:6.4.1.2); K01962 acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2] Tax=RBG_16_Betaproteobacteria_64_18_curated
accA; acetyl-CoA carboxylase carboxyltransferase subunit alpha (EC:6.4.1.2)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha n=1 Tax=Azoarcus sp. (strain BH72) RepID=ACCA_AZOSB
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_8907_3
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1359..2666
DNA (1308bp) protein (436aa)
tRNA(Ile)-lysidine synthetase; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19] Tax=RBG_16_Betaproteobacteria_64_18_curated
tRNA(Ile)-lysidine synthase n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CRQ7_SIDLE
tRNA(Ile)-lysidine synthetase
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_8907_4
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2674..3978)
DNA (1305bp) protein (435aa)
Signal transduction histidine kinase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AAN6_9PROT
signal transduction histidine kinase Tax=RBG_16_Betaproteobacteria_64_18_curated
signal transduction histidine kinase
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_8907_5
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4049..4822)
DNA (774bp) protein (258aa)
Putative two-component system regulatory protein n=1 Tax=mine drainage metagenome RepID=E6QVD6_9ZZZZ
response regulator Tax=RBG_16_Betaproteobacteria_64_18_curated
response regulator
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_8907_6
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5085..5510
DNA (426bp) protein (142aa)
ndk; nucleoside diphosphate kinase (EC:2.7.4.6); K00940 nucleoside-diphosphate kinase [EC:2.7.4.6] Tax=RBG_16_Betaproteobacteria_64_18_curated
ndk; nucleoside diphosphate kinase (EC:2.7.4.6)
nucleoside diphosphate kinase n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0002E42DDA
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_8907_7
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5522..6688
DNA (1167bp) protein (389aa)
Fe-S-cluster redox protein; K06941 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] Tax=RBG_16_Betaproteobacteria_64_18_curated
Dual-specificity RNA methyltransferase RlmN n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=RLMN_AROAE
Fe-S-cluster redox protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_8907_8
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6685..7506
DNA (822bp) protein (274aa)
Type IV pilus biogenesis/stability protein PilW n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B4X4_9PROT
type IV pilus biogenesis/stability protein PilW Tax=RBG_16_Betaproteobacteria_64_18_curated
type IV pilus biogenesis/stability protein PilW
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_8907_9
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7503..8279
DNA (777bp) protein (259aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003612C3D
hypothetical protein; K15539 cytoskeleton protein RodZ Tax=RBG_16_Betaproteobacteria_64_18_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_8907_10
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8281..9567
DNA (1287bp) protein (429aa)
gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase; K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1] Tax=RBG_16_Betaproteobacteria_64_18_curated
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0002DB4244
gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_8907_11
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9585..10865
DNA (1281bp) protein (427aa)
hisS; histidyl-tRNA synthetase (EC:6.1.1.21); K01892 histidyl-tRNA synthetase [EC:6.1.1.21] Tax=RBG_16_Betaproteobacteria_64_18_curated
hisS; histidyl-tRNA synthetase (EC:6.1.1.21)
histidyl-tRNA synthase n=1 Tax=Azoarcus toluclasticus RepID=UPI000377B3ED
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_8907_12
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10865..11494
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RN42_ACCPU
hypothetical protein Tax=RBG_16_Betaproteobacteria_64_18_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_8907_13
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11497..12657
DNA (1161bp) protein (387aa)
Outer membrane protein assembly factor BamB n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B4W8_9PROT
outer membrane assembly lipoprotein YfgL Tax=RBG_16_Betaproteobacteria_64_18_curated
outer membrane assembly lipoprotein YfgL
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_8907_14
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12768..14087
DNA (1320bp) protein (440aa)
GTPase Der n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=DER_NITMU
engA; GTP-binding protein EngA; K03977 GTP-binding protein Tax=RBG_16_Betaproteobacteria_64_18_curated
engA; GTP-binding protein EngA
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_8907_15
R_Betaproteobacteria_61_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14348..14587
DNA (240bp) protein (80aa)
RNA-binding protein Hfq n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=HFQ_NITMU
hfq; RNA-binding protein Hfq; K03666 host factor-I protein Tax=RifCSPlowO2_12_Betaproteobacteria_61_14_curated
hfq; host factor-I protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_8907_16
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14658..15830
DNA (1173bp) protein (391aa)
GTPase HflX n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B4W2_9PROT
small GTP-binding protein domain-containing protein; K03665 GTP-binding protein HflX Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
GTP-binding proten HflX
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_8907_17
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15820..17028
DNA (1209bp) protein (403aa)
HflK; K04088 membrane protease subunit HflK [EC:3.4.-.-] Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
Protease FtsH subunit HflK n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47BS3_DECAR
HflK
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_8907_18
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17025..17903
DNA (879bp) protein (293aa)
membrane protease subunit, stomatin/prohibitin; K04087 membrane protease subunit HflC [EC:3.4.-.-] Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
Protein HflC n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QI63_AZOSU
membrane protease subunit, stomatin/prohibitin
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_8907_19
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17917..18093
DNA (177bp) protein (59aa)
Putative inner membrane protein YjeT (Clustered with HflC) n=1 Tax=Nitrosospira sp. APG3 RepID=M5DF43_9PROT
hypothetical protein; K09937 hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_8907_20
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18096..19241
DNA (1146bp) protein (382aa)
ATP phosphoribosyltransferase regulatory subunit n=1 Tax=Ralstonia sp. PBA RepID=I9W1A5_9RALS
histidyl-tRNA synthetase 2; K02502 ATP phosphoribosyltransferase regulatory subunit Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
hisZ; ATP phosphoribosyltransferase
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_8907_21
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19243..20568
DNA (1326bp) protein (442aa)
adenylosuccinate synthetase (EC:6.3.4.4); K01939 adenylosuccinate synthase [EC:6.3.4.4] Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
adenylosuccinate synthetase (EC:6.3.4.4)
adenylosuccinate synthetase n=1 Tax=Leeia oryzae RepID=UPI00035CA416
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_8907_22
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20864..21079)
DNA (216bp) protein (72aa)
hypothetical protein n=1 Tax=Methylobacter sp. UW 659-2-H10 RepID=UPI00035D2372
hypothetical protein Tax=RBG_16_Betaproteobacteria_58_11_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_8907_23
R_Gammaproteobacteria_56_15, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21206..21514)
DNA (309bp) protein (103aa)
Helix-turn-helix motif n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82X19_NITEU
helix-hairpin-helix DNA-binding motif-containing protein Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_56_15_curated
helix-hairpin-helix DNA-binding motif-containing protein
Displaying 23 items

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