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RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_26249

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_26249_1
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..521)
DNA (519bp) protein (173aa)
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase n=1 Tax=Burkholderia pseudomallei RepID=UPI00016AF5FE
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase Tax=RBG_16_Betaproteobacteria_64_18_curated
mpl; L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_26249_2
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

639..1250
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QP00_AZOSU
hypothetical protein Tax=RBG_16_Betaproteobacteria_64_18_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_26249_3
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1243..1761
DNA (519bp) protein (173aa)
Conserved hypothetical thioredoxin n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K3S8_AZOSB
putative thioredoxin Tax=RBG_16_Betaproteobacteria_64_18_curated
putative thioredoxin
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_26249_4
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1834..2310
DNA (477bp) protein (159aa)
3-dehydroquinate dehydratase; K03786 3-dehydroquinate dehydratase II [EC:4.2.1.10] Tax=RBG_16_Betaproteobacteria_64_18_curated
3-dehydroquinate dehydratase n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QP02_AZOSU
3-dehydroquinate dehydratase
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_26249_5
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2363..2818
DNA (456bp) protein (152aa)
accB; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit (EC:6.4.1.2); K02160 acetyl-CoA carboxylase biotin carboxyl carrier protein Tax=RBG_16_Betaproteobacteria_64_18_curated
Acetyl-CoA carboxylase n=1 Tax=Pseudogulbenkiania ferrooxidans EGD-HP2 RepID=U1BVK3_9NEIS
accB; acetyl-CoA carboxylase, biotin carboxylcarrier protein AccB
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_26249_6
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2819..4183
DNA (1365bp) protein (455aa)
acetyl-CoA carboxylase, biotin carboxylase subunit; K01961 acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] Tax=RBG_16_Betaproteobacteria_64_18_curated
Acetyl-CoA carboxylase, biotin carboxylase subunit n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QP04_AZOSU
acetyl-CoA carboxylase, biotin carboxylase subunit
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_26249_7
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4188..5084
DNA (897bp) protein (299aa)
ribosomal protein L11 methyltransferase n=1 Tax=Aquaspirillum serpens RepID=UPI0003B350A0
ribosomal protein L11 methyltransferase Tax=RBG_16_Betaproteobacteria_64_18_curated
ribosomal protein L11 methyltransferase
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_26249_8
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5081..5896
DNA (816bp) protein (272aa)
MJ0042 family finger-like protein n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CPT8_SIDLE
MJ0042 family finger-like protein Tax=RBG_16_Betaproteobacteria_64_18_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_26249_9
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5907..6842
DNA (936bp) protein (312aa)
sugar kinase; K00856 adenosine kinase [EC:2.7.1.20] Tax=RBG_16_Betaproteobacteria_64_18_curated
Sugar kinase, ribokinase n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QP09_AZOSU
sugar kinase
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_26249_10
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6883..7704)
DNA (822bp) protein (274aa)
bis(5'-nucleosyl)-tetraphosphatase (symmetrical); K01525 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41] Tax=RBG_16_Betaproteobacteria_64_18_curated
biotin transporter BioY n=1 Tax=Methyloversatilis universalis RepID=UPI000370E407
bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_26249_11
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7988..8971
DNA (984bp) protein (328aa)
Aerobic-type carbon monoxide dehydrogenase n=1 Tax=Rhodovulum sp. PH10 RepID=J6UIY2_9RHOB
aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM-like protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
CoxM; aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_26249_12
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

9018..9374
DNA (357bp) protein (119aa)
Xanthine dehydrogenase iron-sulfur subunit n=1 Tax=Rhodovulum sp. PH10 RepID=J6JFM8_9RHOB
aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS-like protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS-like protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_26249_13
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9415..10815
DNA (1401bp) protein (467aa)
Xanthine dehydrogenase n=1 Tax=Rhodovulum sp. PH10 RepID=J6UHP1_9RHOB
aldehyde oxidase and xanthine dehydrogenase Tax=RBG_16_Betaproteobacteria_64_18_curated
aldehyde oxidase and xanthine dehydrogenase
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_26249_14
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10812..11831
DNA (1020bp) protein (340aa)
Xanthine dehydrogenase n=1 Tax=Rhodovulum sp. PH10 RepID=J5PVA1_9RHOB
molybdopterin binding aldehyde oxidase and xanthine dehydrogenase Tax=RBG_16_Betaproteobacteria_64_18_curated
molybdopterin binding aldehyde oxidase and xanthine dehydrogenase
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_26249_15
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12263..13573
DNA (1311bp) protein (437aa)
Diguanylate cyclase n=1 Tax=Kangiella koreensis (strain DSM 16069 / KCTC 12182 / SW-125) RepID=C7R671_KANKD
diguanylate cyclase Tax=RBG_16_Betaproteobacteria_64_18_curated
diguanylate cyclase
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_26249_16
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13596..14294
DNA (699bp) protein (233aa)
inner membrane protein Tax=RBG_16_Betaproteobacteria_64_18_curated
Flagellar brake protein YcgR id=2035678 bin=GWE2_Gallionellales_58_10 species=Burkholderia glumae genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small
pilZ domain protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_26249_17
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14340..14963
DNA (624bp) protein (208aa)
photosynthetic protein synthase I n=1 Tax=Variovorax paradoxus RepID=UPI00037E2B08
electron transport protein sco1/senc; K07152 Tax=RBG_16_Betaproteobacteria_64_18_curated
electron transport protein sco1/senc
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_26249_18
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15005..15922)
DNA (918bp) protein (306aa)
Putative uncharacterized protein n=1 Tax=Geobacter sp. (strain M18) RepID=E8WIY3_GEOS8
hypothetical protein Tax=RBG_16_Betaproteobacteria_64_18_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_26249_19
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16057..16437
DNA (381bp) protein (127aa)
endoribonuclease L-PSP; K07567 TdcF protein Tax=RBG_16_Betaproteobacteria_64_18_curated
Putative endoribonuclease L-PSP id=4042650 bin=GWC2_Proteo_65_14_Ab886 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
endoribonuclease L-PSP
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_26249_20
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16538..17779)
DNA (1242bp) protein (414aa)
transporter Tax=RBG_16_Betaproteobacteria_64_18_curated
Transporter, major facilitator family protein id=2101412 bin=GWD2_Deltaproteobacteria_55_8 species=Acetobacteraceae bacterium AT-5844 genus=unknown taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
transporter
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_26249_21
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18162..19028)
DNA (867bp) protein (289aa)
putative esterase; K01432 arylformamidase [EC:3.5.1.9] Tax=RBG_16_Betaproteobacteria_64_18_curated
hypothetical protein n=1 Tax=Bordetella sp. FB-8 RepID=UPI00035E09F8
putative esterase
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_26249_22
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19275..19760)
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12GH0_POLSJ
hypothetical protein; K09129 hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_26249_23
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19791..20798)
DNA (1008bp) protein (336aa)
ABC transporter substrate-binding protein n=1 Tax=Cupriavidus sp. WS RepID=UPI000369321A
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
Tricarboxylate transport protein TctC
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_26249_24
unknown

Not on your lists

comp(20874..21110)
DNA (237bp) protein (79aa)

This feature has no annotations

RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_26249_25
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21357..21599)
DNA (243bp) protein (81aa)
CopG family transcriptional regulator
Putative uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
Putative uncharacterized protein id=8267210 bin=CD_OP8_4m species=Thioalkalivibrio thiocyanoxidans genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_26249_26
unknown

Not on your lists

21632..21700
DNA (69bp) protein (23aa)

This feature has no annotations

Displaying 26 items

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