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RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_4870

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Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_4870_1
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..516
DNA (516bp) protein (172aa)
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Acidovorax sp. NO-1 RepID=H0BZK0_9BURK
L-carnitine dehydratase/bile acid-inducible protein F Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
L-carnitine dehydratase/bile acid-inducible protein F
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_4870_2
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1069..1890)
DNA (822bp) protein (274aa)
Oxidoreductase fad/NAD(P)-binding domain-containing protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MTV9_9BURK
ferredoxin Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
ferredoxin
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_4870_3
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2085..2864)
DNA (780bp) protein (260aa)
1,2-dihydroxy-3,5-cyclohexadiene-1,5-dicarboxylate dehydrogenase n=1 Tax=Comamonas sp. E6 RepID=C4TNS4_9BURK
short-chain dehydrogenase/reductase SDR Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
short-chain dehydrogenase
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_4870_4
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2871..3851)
DNA (981bp) protein (327aa)
Isophthalate permease n=1 Tax=Comamonas testosteroni RepID=Q5D0Y2_COMTE
putative Bug-like extra cytoplasmic solute receptor, TTT family Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
putative Bug-like extra cytoplasmic solute receptor, TTT family
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_4870_5
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3898..4779)
DNA (882bp) protein (294aa)
Isophthalate dioxygenase oxygenase component n=1 Tax=Comamonas testosteroni RepID=Q5D0Y3_COMTE
Rieske (2Fe-2S) iron-sulfur domain-containing protein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_4870_6
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4802..5176
DNA (375bp) protein (125aa)
alcohol dehydrogenase; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
Alcohol dehydrogenase TsaC2 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HLQ6_ACHXA
alcohol dehydrogenase
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_4870_7
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5230..6003
DNA (774bp) protein (258aa)
ABC transporter related protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V4Z3_VARPE
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
ABC transporter
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_4870_8
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6000..6710
DNA (711bp) protein (237aa)
Branched-chain amino acid transport system ATP-binding protein n=2 Tax=Delftia acidovorans RepID=S2XIP6_DELAC
ABC transporter-like protein; K01996 branched-chain amino acid transport system ATP-binding protein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
ABC transporter
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_4870_9
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6717..7610
DNA (894bp) protein (298aa)
Inner-membrane translocator n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V4Y9_VARPE
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
inner-membrane translocator
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_4870_10
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7633..8628
DNA (996bp) protein (332aa)
Inner-membrane translocator n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V4Y8_VARPE
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
inner-membrane translocator
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_4870_11
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8582..9466)
DNA (885bp) protein (295aa)
phenylacetate-coenzyme A ligase; K01912 phenylacetate-CoA ligase [EC:6.2.1.30] Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
Phenylacetate-coenzyme A ligase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MQB2_9BURK
phenylacetate-coenzyme A ligase
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_4870_12
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9500..10309)
DNA (810bp) protein (270aa)
ABC transporter-like protein; K01996 branched-chain amino acid transport system ATP-binding protein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
ABC transporter-like protein; K01996 branched-chain amino acid transport system ATP-binding protein id=5080675 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
ABC transporter-like protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_4870_13
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10491..11816)
DNA (1326bp) protein (442aa)
Amino acid/amide ABC transporter substrate-binding protein, HAAT family n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SP44_METPP
hypothetical protein; K01999 branched-chain amino acid transport system substrate-binding protein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_4870_14
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11874..12950)
DNA (1077bp) protein (359aa)
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
Putative uncharacterized protein id=1270768 bin=GWE1_Burkholderiales_65_30 species=Curvibacter putative symbiont of Hydra magnipapillata genus=Curvibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
inner-membrane translocator
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_4870_15
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13025..13954)
DNA (930bp) protein (310aa)
ABC transporter permease n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI0002E5FBAD
inner-membrane translocator Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
inner-membrane translocator
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_4870_16
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13967..14761)
DNA (795bp) protein (265aa)
ABC transporter n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MQB7_9BURK
ABC transporter-like protein; K01995 branched-chain amino acid transport system ATP-binding protein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
ABC transporter-like protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_4870_17
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14775..16721)
DNA (1947bp) protein (649aa)
AMP-dependent synthetase and ligase; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3] id=5080670 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
AMP-dependent synthetase and ligase Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
AMP-dependent synthetase and ligase
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_4870_18
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16718..17020)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HLQ2_ACHXA
hypothetical protein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_4870_19
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17068..18270)
DNA (1203bp) protein (401aa)
hypothetical protein; K07588 LAO/AO transport system kinase [EC:2.7.-.-] Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
Uncharacterized protein n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P5Y1_AROAE
hypothetical protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_4870_20
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18267..19910)
DNA (1644bp) protein (548aa)
methylmalonyl-CoA mutase, large subunit; K01848 methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
Methylmalonyl-CoA mutase, large subunit id=3964594 bin=GWC2_Methylomirabilis_70_16 species=Xanthobacter autotrophicus genus=Xanthobacter taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
methylmalonyl-CoA mutase, large subunit
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_4870_21
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19907..20329)
DNA (423bp) protein (141aa)
cobalamin B12-binding domain-containing protein; K01849 methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
Cobalamin B12-binding domain protein id=3964596 bin=GWC2_Methylomirabilis_70_16 species=Xanthobacter autotrophicus genus=Xanthobacter taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
cobalamin B12-binding domain-containing protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_4870_22
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20322..20777)
DNA (456bp) protein (152aa)
lmrA; regulatory protein TetR Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
Regulatory protein, TetR id=3964598 bin=GWC2_Methylomirabilis_70_16 species=Rhodopseudomonas palustris genus=Rhodopseudomonas taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
lmrA; regulatory protein TetR
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_4870_23
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21072..22250
DNA (1179bp) protein (393aa)
isovaleryl-CoA dehydrogenase (EC:1.3.99.10); K00253 isovaleryl-CoA dehydrogenase [EC:1.3.8.4] Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
isovaleryl-CoA dehydrogenase n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI00030C0AB9
acyl-CoA dehydrogenase
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_4870_24
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22476..25649)
DNA (3174bp) protein (1058aa)
type III restriction enzyme, res subunit; K01156 type III restriction enzyme [EC:3.1.21.5] Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
Type III restriction enzyme, res subunit n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KXS6_9BURK
type III restriction enzyme, res subunit
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_4870_25
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25689..27020)
DNA (1332bp) protein (444aa)
hypothetical protein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
Putative uncharacterized protein id=1275422 bin=GWE1_Burkholderiales_65_30 species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
hypothetical protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_4870_26
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27030..28127)
DNA (1098bp) protein (366aa)
hypothetical protein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
hypothetical protein id=5083620 bin=GWF1_Burkholderiales_GWF1_66_17 species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_4870_27
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28166..28810)
DNA (645bp) protein (215aa)
hypothetical protein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
Putative uncharacterized protein id=1275424 bin=GWE1_Burkholderiales_65_30 species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
hypothetical protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_4870_28
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28807..29382)
DNA (576bp) protein (192aa)
TRAG family protein; K03205 type IV secretion system protein VirD4 Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
TRAG family protein; K03205 type IV secretion system protein VirD4 id=5083618 bin=GWF1_Burkholderiales_GWF1_66_17 species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
virD4; type IV secretory pathway, VirD4 component
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_4870_29
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29396..30802)
DNA (1407bp) protein (469aa)
TRAG family protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BVK3_9BURK
TRAG family protein; K03205 type IV secretion system protein VirD4 Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
TRAG family protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_4870_30
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30799..31941)
DNA (1143bp) protein (381aa)
Type IV secretory pathway, VirB11 component n=1 Tax=Acidovorax sp. NO-1 RepID=H0BVK4_9BURK
virB11; type IV secretory pathway, VirB11 component; K03196 type IV secretion system protein VirB11 Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
virB11; type IV secretory pathway, VirB11 component
Displaying items 1-30 of 51 in total

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