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RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_4022

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_4022_1
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

3..560
DNA (558bp) protein (186aa)
Cytochrome c, class I n=1 Tax=Methylacidiphilum infernorum (isolate V4) RepID=B3DUI3_METI4
cytochrome c, class I Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
cytochrome c, class I
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_4022_2
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

580..930
DNA (351bp) protein (117aa)
hypothetical protein n=1 Tax=zeta proteobacterium SCGC AB-133-G06 RepID=UPI000380807E
cytochrome C class I Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
cytochrome C class I
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_4022_3
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists


comp(1037..1462)
DNA (426bp) protein (142aa)
50S ribosomal protein L17 n=1 Tax=Nitrospina gracilis 3/211 RepID=M1ZAM5_9BACT
50S ribosomal protein L17; K02879 large subunit ribosomal protein L17 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
50S ribosomal protein L17
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_4022_4
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(1477..2463)
DNA (987bp) protein (329aa)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6) Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha n=1 Tax=Nitrospina gracilis 3/211 RepID=M1YXC0_9BACT
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_4022_5
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists


comp(2557..3183)
DNA (627bp) protein (209aa)
30S ribosomal protein S4 n=1 Tax=Geobacter sp. (strain M18) RepID=E8WUB6_GEOS8
30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
30S ribosomal protein S4
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_4022_6
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists


comp(3422..3859)
DNA (438bp) protein (146aa)
30S ribosomal protein S11 n=4 Tax=Thermoanaerobacter RepID=G2MVS7_9THEO
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
30S ribosomal protein S11
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_4022_7
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists


comp(3863..4237)
DNA (375bp) protein (125aa)
30S ribosomal protein S13 n=1 Tax=Thermoanaerobacterium saccharolyticum (strain DSM 8691 / JW/SL-YS485) RepID=I3VU58_THESW
30S ribosomal protein S13 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
30S ribosomal protein S13
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_4022_8
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(4321..4434)
DNA (114bp) protein (38aa)
50S ribosomal protein L36 n=6 Tax=Clostridiales RepID=D5HIZ3_9FIRM
LSU ribosomal protein L36P Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
LSU ribosomal protein L36P
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_4022_9
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(4557..4775)
DNA (219bp) protein (73aa)
translation initiation factor IF-1 n=1 Tax=Nitrospina sp. AB-629-B06 RepID=UPI00035E9BFE
translation initiation factor IF-1; K02518 translation initiation factor IF-1 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
infA; translation initiation factor IF-1
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_4022_10
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(4910..5656)
DNA (747bp) protein (249aa)
map; methionine aminopeptidase (EC:3.4.11.18) Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
map; methionine aminopeptidase (EC:3.4.11.18)
Methionine aminopeptidase n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKJ0_9BACT
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_4022_11
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(5643..6296)
DNA (654bp) protein (218aa)
adk; adenylate kinase (EC:2.7.4.3); K00939 adenylate kinase [EC:2.7.4.3] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
adk; adenylate kinase (EC:2.7.4.3)
Adenylate kinase n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=KAD_GEODF
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_4022_12
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists


comp(6386..7699)
DNA (1314bp) protein (438aa)
hypothetical protein n=1 Tax=Nitrospina sp. AB-629-B06 RepID=UPI000367E4D3
secY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
secY; preprotein translocase subunit SecY
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_4022_13
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists


comp(7764..8201)
DNA (438bp) protein (146aa)
50S ribosomal protein L15 n=1 Tax=Nitrospina gracilis 3/211 RepID=M1YYI8_9BACT
50S ribosomal protein L15 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
50S ribosomal protein L15
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_4022_14
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists


comp(8249..8806)
DNA (558bp) protein (186aa)
30S ribosomal protein S5 n=1 Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NJC2_DESAR
30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
30S ribosomal protein S5
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_4022_15
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists


comp(8846..9208)
DNA (363bp) protein (121aa)
50S ribosomal protein L18 n=1 Tax=Hippea alviniae RepID=UPI0003B50732
rplR; 50S ribosomal protein L18; K02881 large subunit ribosomal protein L18 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
rplR; 50S ribosomal protein L18
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_4022_16
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists


comp(9251..9799)
DNA (549bp) protein (183aa)
50S ribosomal protein L6 n=1 Tax=Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) RepID=F4LSV0_TEPAE
50S ribosomal protein L6; K02933 large subunit ribosomal protein L6 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
50S ribosomal protein L6
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_4022_17
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists


comp(9867..10265)
DNA (399bp) protein (133aa)
30S ribosomal protein S8 n=1 Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=RS8_THEYD
rpsH; ribosomal protein S8; K02994 small subunit ribosomal protein S8 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
rpsH; 30S ribosomal protein S8
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_4022_18
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists


comp(10553..11098)
DNA (546bp) protein (182aa)
50S ribosomal protein L5 n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=RL5_GEOUR
rplE; 50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
50S ribosomal protein L5
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_4022_19
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists


comp(11114..11449)
DNA (336bp) protein (112aa)
rplX; 50S ribosomal protein L24; K02895 large subunit ribosomal protein L24 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
50S ribosomal protein L24
50S ribosomal protein L24 id=4627868 bin=GWC2_Deltaproteobacteria_42_51 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_4022_20
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists


comp(11446..11814)
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Nitrospina gracilis 3/211 RepID=M1YIJ9_9BACT
rplN; 50S ribosomal protein L14; K02874 large subunit ribosomal protein L14 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
rplN; 50S ribosomal protein L14
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_4022_21
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists


comp(11852..12112)
DNA (261bp) protein (87aa)
30S ribosomal protein S17 n=4 Tax=Clostridiales RepID=A7B536_RUMGN
30S ribosomal protein S17; K02961 small subunit ribosomal protein S17 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
30S ribosomal protein S17
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_4022_22
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists


comp(12186..12380)
DNA (195bp) protein (65aa)
50S ribosomal protein L29 n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2EU81_CLOS4
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
ribosomal protein L29
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_4022_23
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists


comp(12377..12790)
DNA (414bp) protein (138aa)
50S ribosomal protein L16 n=1 Tax=Nitrospina sp. SCGC AAA288-L16 RepID=UPI000374D2F9
LSU ribosomal protein L16P Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
LSU ribosomal protein L16P
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_4022_24
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists


comp(12841..13515)
DNA (675bp) protein (225aa)
rpsC; 30S ribosomal protein S3; K02982 small subunit ribosomal protein S3 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
30S ribosomal protein S3 id=4261414 bin=GWC2_Pelobacter_58_13 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
rpsC; 30S ribosomal protein S3
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_4022_25
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists


comp(13533..13859)
DNA (327bp) protein (109aa)
50S ribosomal protein L22 n=1 Tax=Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529 / HD100) RepID=RL22_BDEBA
rplV; 50S ribosomal protein L22; K02890 large subunit ribosomal protein L22 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
50S ribosomal protein L22
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_4022_26
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists


comp(13879..14169)
DNA (291bp) protein (97aa)
30S ribosomal protein S19 n=1 Tax=Nitrospina sp. SCGC AAA288-L16 RepID=UPI00037612A0
rpsS; 30S ribosomal protein S19; K02965 small subunit ribosomal protein S19 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
rpsS; 30S ribosomal protein S19
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_4022_27
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists


comp(14179..15003)
DNA (825bp) protein (275aa)
50S ribosomal protein L2 n=1 Tax=Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1) RepID=D3P934_DEFDS
rplB; 50S ribosomal protein L2; K02886 large subunit ribosomal protein L2 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
rplB; 50S ribosomal protein L2
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_4022_28
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists


comp(15113..15406)
DNA (294bp) protein (98aa)
rplW; 50S ribosomal protein L23; K02892 large subunit ribosomal protein L23 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
50S ribosomal protein L23 id=3967644 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
rplW; 50S ribosomal protein L23
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_4022_29
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists


comp(15403..16029)
DNA (627bp) protein (209aa)
50S ribosomal protein L4 n=1 Tax=Clostridium ultunense Esp RepID=M1Z7Q6_9CLOT
rplD; 50S ribosomal protein L4; K02926 large subunit ribosomal protein L4 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
rplD; 50S ribosomal protein L4
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_4022_30
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists


comp(16016..16654)
DNA (639bp) protein (213aa)
50S ribosomal protein L3 n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=RL3_CARHZ
rplC; 50S ribosomal protein L3; K02906 large subunit ribosomal protein L3 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
rplC; 50S ribosomal protein L3
Displaying items 1-30 of 32 in total

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