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RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2411

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2411_1
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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2..898
DNA (897bp) protein (299aa)
ychF; GTP-dependent nucleic acid-binding protein EngD; K06942 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
GTP-binding protein YchF id=2299576 bin=GWB2_Nitrospirae_rel_47_37 species=[Clostridium] stercorarium genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
ychF; GTP-dependent nucleic acid-binding protein EngD
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2411_2
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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1068..1820
DNA (753bp) protein (251aa)
Cytochrome c biogenesis protein CcdA n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBK8_9BACT
ccdA; cytochrome c biogenesis protein CcdA; K06196 cytochrome c-type biogenesis protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
ccdA; cytochrome c biogenesis protein CcdA
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2411_3
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

1886..3256
DNA (1371bp) protein (457aa)
Mg-dependent DNase; K03424 TatD DNase family protein [EC:3.1.21.-] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Hydrolase, TatD family id=4697053 bin=GWC2_Nitrospirae-rel_56_14 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
hydrolase TatD
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2411_4
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(3264..6422)
DNA (3159bp) protein (1053aa)
(glutamate--ammonia-ligase) adenylyltransferase (EC:2.7.7.42); K00982 glutamate-ammonia-ligase adenylyltransferase [EC:2.7.7.42] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
(glutamate--ammonia-ligase) adenylyltransferase (EC:2.7.7.42)
Putative Glutamate-ammonia ligase adenylyltransferase n=1 Tax=Nitrospina gracilis 3/211 RepID=M1YW79_9BACT
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2411_5
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

6511..7293
DNA (783bp) protein (261aa)
general secretion pathway protein C Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
PDZ/DHR/GLGF domain protein id=3004137 bin=GWC2_Nitrospirae-rel_56_14 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
general secretion pathway protein C
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2411_6
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

7334..9499
DNA (2166bp) protein (722aa)
general secretion pathway protein D; K02453 general secretion pathway protein D Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
General secretion pathway protein D id=4962177 bin=GWC2_Nitrospirae_57_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
general secretion pathway protein D
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2411_7
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

9558..11045
DNA (1488bp) protein (496aa)
general secretory pathway protein E; K02454 general secretion pathway protein E Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
General secretory pathway protein E id=4962178 bin=GWC2_Nitrospirae_57_13 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
general secretory pathway protein E
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2411_8
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

11086..12303
DNA (1218bp) protein (406aa)
General secretion pathway protein F n=1 Tax=Desulfococcus multivorans DSM 2059 RepID=S7V326_DESML
general secretion pathway protein F; K02455 general secretion pathway protein F Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
general secretion pathway protein F
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2411_9
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

12317..12778
DNA (462bp) protein (154aa)
General secretion pathway protein G n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JVV2_DESAC
gspG1; protein GspG1; K02456 general secretion pathway protein G Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
general secretion pathway protein GspG
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2411_10
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

12756..13295
DNA (540bp) protein (180aa)
hypothetical protein; K02457 general secretion pathway protein H id=14426475 bin=bin1_lowGC species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2411_11
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

13273..13665
DNA (393bp) protein (131aa)
Putative uncharacterized protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Putative uncharacterized protein id=1865434 bin=GWD2_Nitrospirae-related_57_8 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2411_12
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

13655..14299
DNA (645bp) protein (215aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2411_13
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

14310..15659
DNA (1350bp) protein (450aa)
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Putative general secretion pathway protein L id=4341599 bin=GWC2_Nitrospirae_57_13 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2411_14
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

15656..16186
DNA (531bp) protein (177aa)
Uncharacterized protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Uncharacterized protein id=4778969 bin=GWA2_OP3_52_12 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2411_15
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

16237..17076
DNA (840bp) protein (280aa)
hypothetical protein n=1 Tax=Desulfurobacterium sp. TC5-1 RepID=UPI0003B395C0
hypothetical protein; K02460 general secretion pathway protein K Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2411_16
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

17073..17663
DNA (591bp) protein (197aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2411_trna_1
unknown

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comp(17716..17788)
DNA (73bp)
transferRNA
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2411_17
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(17874..19619)
DNA (1746bp) protein (582aa)
hypothetical protein n=1 Tax=Nitrospina sp. AB-629-B18 RepID=UPI00036B01B5
RpoD family RNA polymerase sigma factor; K03086 RNA polymerase primary sigma factor Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RNA polymerase sigma70 factor
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2411_18
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(19665..21467)
DNA (1803bp) protein (601aa)
DNA primase; K02316 DNA primase [EC:2.7.7.-] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein n=1 Tax=Nitrospina sp. AB-629-B18 RepID=UPI0003682914
DNA primase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2411_19
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(21614..22057)
DNA (444bp) protein (148aa)
YqeY-like protein n=2 Tax=Paenibacillus RepID=C6J350_9BACL
hypothetical protein; K09117 hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2411_20
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(22072..22266)
DNA (195bp) protein (65aa)
30S ribosomal protein S21 n=4 Tax=Leptospirillum RepID=J9ZDE5_LEPFM
rpsU; 30S ribosomal protein S21 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
30S ribosomal protein S21
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2411_21
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(22452..23342)
DNA (891bp) protein (297aa)
Nickel-dependent hydrogenase large subunit n=2 Tax=uncultured candidate division OP1 bacterium RepID=H5SS38_9BACT
putative NiFe hydrogenase alpha subunit Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
nickel-dependent hydrogenase large subunit
Displaying 22 items

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