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RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_9946

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_9946_1
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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2..415
DNA (414bp) protein (138aa)
DoxX family protein; K15977 putative oxidoreductase Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
DoxX family protein; K15977 putative oxidoreductase id=14429532 bin=bin3_NC10 species=Nitrolancetus hollandicus genus=Nitrolancetus taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin3_NC10 organism_group=NC10
DoxX family protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_9946_2
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(471..1637)
DNA (1167bp) protein (389aa)
yfdZ; pLp-dependent aminotransferase (EC:2.6.1.-); K14261 alanine-synthesizing transaminase [EC:2.6.1.-] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
yfdZ; pLp-dependent aminotransferase (EC:2.6.1.-)
Aspartate/tyrosine/aromatic aminotransferase id=3754259 bin=GWC2_Deltaproteobacteria_42_51 species=Methylomicrobium album genus=Methylomicrobium taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_9946_3
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(1730..2635)
DNA (906bp) protein (302aa)
LipA2; lipoyl synthase; K03644 lipoic acid synthetase [EC:2.8.1.8] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Lipoyl synthase id=2537285 bin=GWC2_CP_Nitrospirae-rel_42_7 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
LipA2; lipoyl synthase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_9946_4
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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2882..3868
DNA (987bp) protein (329aa)
ispB; octaprenyl diphosphate synthase; K02523 octaprenyl-diphosphate synthase [EC:2.5.1.90] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Polyprenyl synthetase id=4925456 bin=GWC2_Deltaproteobacteria_42_51 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
ispB; octaprenyl diphosphate synthase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_9946_5
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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3878..4384
DNA (507bp) protein (169aa)
Putative uncharacterized protein n=1 Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YFQ9_THEYD
hypothetical protein; K09141 hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_9946_6
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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4381..5655
DNA (1275bp) protein (425aa)
diguanylate cyclase Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor domain-containing protein id=1708238 bin=GWB2_Proteobacteria_55_19 species=Herbaspirillum sp. GW103 genus=Herbaspirillum taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
diguanylate cyclase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_9946_7
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

5766..6749
DNA (984bp) protein (328aa)
Radical SAM domain-containing protein; K04069 pyruvate formate lyase activating enzyme [EC:1.97.1.4] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Radical SAM domain protein n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CI38_DESK7
Radical SAM domain-containing protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_9946_8
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(6776..7924)
DNA (1149bp) protein (383aa)
dnaN; DNA polymerase III subunit beta; K02338 DNA polymerase III subunit beta [EC:2.7.7.7] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein n=1 Tax=Nitrospina sp. SCGC AAA288-L16 RepID=UPI00036503B4
dnaN; DNA polymerase III subunit beta
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_9946_9
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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8350..9204
DNA (855bp) protein (285aa)
Electron transfer flavoprotein, beta subunit/FixA family protein n=1 Tax=Synechococcus sp. (strain JA-2-3B'a(2-13)) RepID=Q2JK98_SYNJB
electron transfer flavoprotein subunit beta/FixA family protein; K03521 electron transfer flavoprotein beta subunit Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
electron transfer flavoprotein subunit beta/FixA family protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_9946_10
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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9197..10291
DNA (1095bp) protein (365aa)
Electron transfer flavoprotein, alpha subunit/FixB family protein n=1 Tax=Synechococcus sp. (strain JA-2-3B'a(2-13)) RepID=Q2JK99_SYNJB
electron transfer flavoprotein subunit alpha/FixB family protein; K03522 electron transfer flavoprotein alpha subunit Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
electron transfer flavoprotein subunit alpha/FixB family protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_9946_11
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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10380..12095
DNA (1716bp) protein (572aa)
iron-sulfur cluster-binding protein; K00311 electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Iron-sulfur cluster-binding protein n=1 Tax=Synechococcus sp. (strain JA-3-3Ab) RepID=Q2JTX9_SYNJA
iron-sulfur cluster-binding protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_9946_12
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

12165..12989
DNA (825bp) protein (275aa)
id=1811931 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
id=1811931 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_9946_13
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(13002..13625)
DNA (624bp) protein (208aa)
thymidylate synthase, flavin-dependent (EC:2.1.1.148); K03465 thymidylate synthase (FAD) [EC:2.1.1.148] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
thymidylate synthase, flavin-dependent (EC:2.1.1.148)
Thymidylate synthase ThyX id=4058993 bin=GWF2_Planctomycete_41_51 species=Dehalococcoides mccartyi genus=Dehalococcoides taxon_order=Dehalococcoidales taxon_class=Dehalococcoidia phylum=Chloroflexi tax=GWF2_Planctomycete_41_51 organism_group=Planctomycetes organism_desc=a211
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_9946_14
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(13682..14584)
DNA (903bp) protein (301aa)
Tyrosine recombinase XerD n=1 Tax=Thermincola potens (strain JR) RepID=D5X7E5_THEPJ
tyrosine recombinase XerD; K04763 integrase/recombinase XerD Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
tyrosine recombinase XerD
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_9946_15
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(14565..15218)
DNA (654bp) protein (218aa)
Beta-lactamase-like Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Beta-lactamase-like id=4534112 bin=GWC2_Nitrospirae_57_13 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
Beta-lactamase-like
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_9946_16
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

15381..16448
DNA (1068bp) protein (356aa)
Membrane protein, UPF0118 superfamily n=2 Tax=Geobacter sulfurreducens RepID=D7AGZ2_GEOSK
membrane protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_9946_17
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists


16545..16841
DNA (297bp) protein (99aa)
30S ribosomal protein S20 n=1 Tax=Desulfococcus multivorans DSM 2059 RepID=S7TBZ5_DESML
rpsT; 30S ribosomal protein S20; K02968 small subunit ribosomal protein S20 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
rpsT; 30S ribosomal protein S20
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_9946_18
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(16806..17822)
DNA (1017bp) protein (339aa)
DNA polymerase III subunit delta; K02340 DNA polymerase III subunit delta [EC:2.7.7.7] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
DNA polymerase III, delta subunit n=1 Tax=Geobacter sp. (strain M21) RepID=C6E104_GEOSM
DNA polymerase III subunit delta
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_9946_19
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(17841..18431)
DNA (591bp) protein (197aa)
DnaJ domain protein n=1 Tax=Bacteriovorax sp. Seq25_V RepID=T0RF71_9DELT
putative heat shock-like protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
putative heat shock-like protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_9946_20
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(18441..19409)
DNA (969bp) protein (323aa)
CobQ/CobB/MinD/ParA nucleotide binding domain protein n=1 Tax=Bacteriovorax sp. Seq25_V RepID=T0SS71_9DELT
putative flagellar number regulator; K04562 flagellar biosynthesis protein FlhG Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
ATP-binding protein
Displaying 20 items

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