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RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_22473

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_22473_1
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(1..543)
DNA (543bp) protein (181aa)
tdh; putative L-threonine 3-dehydrogenase (EC:1.1.1.103); K00060 threonine 3-dehydrogenase [EC:1.1.1.103] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
tdh; putative L-threonine 3-dehydrogenase (EC:1.1.1.103)
L-threonine dehydrogenase n=1 Tax=planctomycete KSU-1 RepID=I3IHI2_9PLAN
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_22473_2
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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778..2118
DNA (1341bp) protein (447aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBH7_9BACT
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_22473_3
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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2135..4108
DNA (1974bp) protein (658aa)
acsA; acetate--CoA ligase (EC:6.2.1.1); K01895 acetyl-CoA synthetase [EC:6.2.1.1] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
acsA; acetate--CoA ligase (EC:6.2.1.1)
Acetyl-coenzyme A synthetase id=3731236 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_22473_trna_1
unknown

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4217..4290
DNA (74bp)
transferRNA
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_22473_4
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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4481..4987
DNA (507bp) protein (169aa)
gtp cyclohydrolase subunit moac; K03637 molybdenum cofactor biosynthesis protein C Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Molybdenum cofactor biosynthesis protein C id=2213017 bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
GTP cyclohydrolase subunit moac
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_22473_5
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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5023..6381
DNA (1359bp) protein (453aa)
DNA repair protein RadA (EC:2.1.1.63); K04485 DNA repair protein RadA/Sms Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
DNA repair protein RadA (EC:2.1.1.63)
DNA repair protein radA id=4044423 bin=GWC2_Nitrospirae-rel_56_14 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_22473_6
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(6390..7472)
DNA (1083bp) protein (361aa)
peptidylarginine deiminase-like protein (EC:3.5.3.12); K10536 agmatine deiminase [EC:3.5.3.12] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
peptidylarginine deiminase-like protein (EC:3.5.3.12)
Peptidylarginine deiminase-like enzyme id=1789003 bin=GWB2_Deltaproteobacteria_65_81 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWB2_Deltaproteobacteria_65_81 organism_group=Deltaproteobacteria organism_desc=Good +
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_22473_7
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(7619..8518)
DNA (900bp) protein (300aa)
aguB; N-carbamoylputrescine amidase; K12251 N-carbamoylputrescine amidase [EC:3.5.1.53] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase id=2854538 bin=GWC2_Deltaproteobacteria_66_88 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
aguB; N-carbamoylputrescine amidase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_22473_8
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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8677..9156
DNA (480bp) protein (160aa)
CarD family transcriptional regulator; K07736 CarD family transcriptional regulator Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
CarD-like transcriptional regulator id=14428830 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
CarD family transcriptional regulator
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_22473_9
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

9292..10311
DNA (1020bp) protein (340aa)
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Putative uncharacterized protein id=4433990 bin=GWC2_Nitrospirae_57_13 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_22473_10
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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10352..10888
DNA (537bp) protein (179aa)
uracil phosphoribosyltransferase (EC:2.4.2.9); K02825 pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
pyrR; bifunctional pyrimidine operon regulatory protein/uracil phosphoribosyltransferase (EC:2.4.2.9) id=14430882 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
uracil phosphoribosyltransferase (EC:2.4.2.9)
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_22473_11
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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10913..11839
DNA (927bp) protein (309aa)
aspartate carbamoyltransferase (EC:2.1.3.2); K00609 aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
aspartate carbamoyltransferase (EC:2.1.3.2)
Aspartate carbamoyltransferase id=2009320 bin=GWB2_Proteobacteria_55_19 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_22473_12
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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11888..12211
DNA (324bp) protein (108aa)
Putative uncharacterized protein n=1 Tax=Beggiatoa sp. PS RepID=A7BXU2_9GAMM
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein
Displaying 13 items

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