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RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2939

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2939_1
unknown

Not on your lists

comp(3..65)
DNA (63bp) protein (21aa)

This feature has no annotations

RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2939_2
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(106..297)
DNA (192bp) protein (64aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2939_3
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

637..969
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1Z0X3_METPS
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2939_4
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

1594..4038
DNA (2445bp) protein (815aa)
nrdZ; ribonucleoside-diphosphate reductase NrdZ (EC:1.17.4.1) Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
ribonucleoside-diphosphate reductase class II (EC:1.17.4.-)
Ribonucleoside-diphosphate reductase id=3240602 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2939_5
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

4045..5154
DNA (1110bp) protein (370aa)
dcd; 2'-deoxycytidine 5'-triphosphate deaminase (EC:3.5.4.13); K01494 dCTP deaminase [EC:3.5.4.13] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
dcd; 2'-deoxycytidine 5'-triphosphate deaminase (EC:3.5.4.13)
2'-deoxycytidine 5'-triphosphate deaminase id=1716994 bin=GWB2_Proteobacteria_55_19 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2939_6
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

5406..5792
DNA (387bp) protein (129aa)
transcriptional regulator, TraR/DksA family; K06204 DnaK suppressor protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Transcriptional regulator, TraR/DksA family id=3383558 bin=GWA1_Deltaproteobacteria_52_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA1_Deltaproteobacteria_52_35 organism_group=Deltaproteobacteria organism_desc=Good + Candidate for further analysis!
transcriptional regulator, TraR/DksA family
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2939_7
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

5809..6651
DNA (843bp) protein (281aa)
peptidase M48, Ste24p; K03799 heat shock protein HtpX [EC:3.4.24.-] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Protease HtpX homolog id=4109493 bin=GWC2_Deltaproteobacteria_42_51 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
peptidase M48, Ste24p
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2939_8
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

6693..6899
DNA (207bp) protein (69aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2939_9
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

6927..7334
DNA (408bp) protein (136aa)
Hypothetical cytosolic protein n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LUK0_SYNAS
cytoplasmic protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
cytoplasmic protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2939_10
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(7347..8600)
DNA (1254bp) protein (418aa)
lysA; diaminopimelate decarboxylase (EC:4.1.1.20) Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
lysA; diaminopimelate decarboxylase (EC:4.1.1.20)
Diaminopimelate decarboxylase id=2262603 bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2939_11
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(8687..8812)
DNA (126bp) protein (42aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2939_12
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(8809..10191)
DNA (1383bp) protein (461aa)
argininosuccinate lyase; K01755 argininosuccinate lyase [EC:4.3.2.1] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Argininosuccinate lyase id=4882684 bin=GWC2_Pelobacter_58_13 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
argininosuccinate lyase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2939_13
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(10188..11393)
DNA (1206bp) protein (402aa)
threonine dehydratase; K01754 threonine dehydratase [EC:4.3.1.19] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Threonine dehydratase n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CLR1_DESK7
threonine dehydratase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2939_14
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

11588..11959
DNA (372bp) protein (124aa)
6-pyruvoyl-tetrahydropterin synthase; K01737 6-pyruvoyl tetrahydrobiopterin synthase [EC:4.2.3.12] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
6-carboxy-5,6,7,8-tetrahydropterin synthase id=3774702 bin=GWC2_CP_Nitrospirae-rel_42_7 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
6-pyruvoyl-tetrahydropterin synthase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2939_15
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(11987..13699)
DNA (1713bp) protein (571aa)
N-acetylmuramoyl-L-alanine amidase; K01448 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
N-acetylmuramyl-L-alanine amidase id=4833919 bin=GWC2_Pelobacter_58_13 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
N-acetylmuramyl-L-alanine amidase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2939_16
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(13696..15261)
DNA (1566bp) protein (522aa)
Response regulator receiver modulated diguanylate cyclase n=1 Tax=Geobacter sp. (strain M18) RepID=E8WQN9_GEOS8
response regulator receiver modulated diguanylate cyclase Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
response regulator receiver modulated diguanylate cyclase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2939_17
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(15316..15804)
DNA (489bp) protein (163aa)
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein id=14430954 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2939_18
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(15797..17155)
DNA (1359bp) protein (453aa)
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=B8CX99_HALOH
MiaB family RNA modification protein; K06168 bifunctional enzyme involved in thiolation and methylation of tRNA Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
MiaB family RNA modification protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2939_19
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

17328..18641
DNA (1314bp) protein (438aa)
hypothetical protein n=1 Tax=Nitrospina sp. AB-629-B18 RepID=UPI0003655BA5
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2939_20
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

18644..19816
DNA (1173bp) protein (391aa)
amidohydrolase Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Pm20d; peptidase M20 domain-containing protein 2 (Aminoacylase 1-like protein 2) id=14430563 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
amidohydrolase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2939_21
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

20043..20150
DNA (108bp) protein (36aa)
ilvE; branched-chain amino acid aminotransferase (EC:2.6.1.42); K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1ZKY3_9BACT
branched-chain amino acid aminotransferase, group I
Displaying 21 items

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