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RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2142

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2142_1
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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248..514
DNA (267bp) protein (89aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2142_2
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(741..1436)
DNA (696bp) protein (232aa)
Glycosyl transferase n=1 Tax=Sulfurovum sp. (strain NBC37-1) RepID=A6QAH9_SULNB
glycosyl transferase family protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
glycosyl transferase family protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2142_3
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(1429..2622)
DNA (1194bp) protein (398aa)
ATP-grasp protein-like protein n=1 Tax=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) RepID=B2A3J9_NATTJ
ATP-grasp protein-like protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
ATP-grasp protein-like protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2142_4
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(2606..3271)
DNA (666bp) protein (222aa)
phosphatidylserine decarboxylase; K01613 phosphatidylserine decarboxylase [EC:4.1.1.65] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein n=1 Tax=Aminicenantes bacterium SCGC AAA252-N07 RepID=UPI000361DF92
phosphatidylserine decarboxylase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2142_5
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(3387..4361)
DNA (975bp) protein (325aa)
Porphobilinogen synthase (EC:4.2.1.24); K01698 porphobilinogen synthase [EC:4.2.1.24] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Porphobilinogen synthase (EC:4.2.1.24)
Delta-aminolevulinic acid dehydratase id=4717295 bin=GWC2_Nitrospirae-rel_56_14 species=Deferribacter desulfuricans genus=Deferribacter taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2142_6
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(4400..5920)
DNA (1521bp) protein (507aa)
uroporphyrin-III C-methyltransferase; K13542 uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Uroporphyrinogen-III C-methyltransferase id=4757548 bin=GWA2_OP3_52_12 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
uroporphyrin-III C-methyltransferase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2142_7
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(5955..6632)
DNA (678bp) protein (226aa)
uroporphyrin-III C/tetrapyrrole methyltransferase; K07056 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Ribosomal RNA small subunit methyltransferase I id=1935631 bin=GWD2_Nitrospirae-related_57_8 species=Clostridium ultunense genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
uroporphyrin-III C/tetrapyrrole methyltransferase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2142_8
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(6721..8004)
DNA (1284bp) protein (428aa)
UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit (EC:2.4.1.-)
TPR repeats containing protein n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I5V3_METCZ
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2142_9
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(8251..9738)
DNA (1488bp) protein (496aa)
glnS; glutamyl-tRNA synthetase (EC:6.1.1.17); K09698 nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
glnS; glutamyl-tRNA synthetase (EC:6.1.1.17)
Glutamate--tRNA ligase n=1 Tax=Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1) RepID=D3PD67_DEFDS
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2142_10
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(9776..10291)
DNA (516bp) protein (172aa)
nitroreductase family protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Nitroreductase id=4920922 bin=GWC2_Deltaproteobacteria_42_51 species=Desulfurivibrio alkaliphilus genus=Desulfurivibrio taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
nitroreductase family protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2142_11
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(10343..12199)
DNA (1857bp) protein (619aa)
NADPH-dependent glutamate synthase beta chain-like oxidoreductase Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
NAD(P) oxidoreductase id=2315406 bin=GWA2_Planctomycetia_40_7 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Planctomycetia_40_7 organism_group=Planctomycetes
NADPH-dependent glutamate synthase beta chain-like oxidoreductase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2142_12
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

12358..12834
DNA (477bp) protein (159aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2142_13
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(12868..14637)
DNA (1770bp) protein (590aa)
Fe-S oxidoreductase n=1 Tax=Anaerobaculum mobile (strain ATCC BAA-54 / DSM 13181 / NGA) RepID=I4BY64_ANAMD
Fe-S oxidoreductase Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Fe-S oxidoreductase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2142_14
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(14790..15632)
DNA (843bp) protein (281aa)
accD; acetyl-Coa carboxylase, carboxyl transferase subunit beta (EC:6.4.1.2); K01963 acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
accD; acetyl-Coa carboxylase, carboxyl transferase subunit beta (EC:6.4.1.2)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta id=4397375 bin=GWC2_Pelobacter_58_13 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2142_15
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

15783..16772
DNA (990bp) protein (330aa)
TRAP transporter solute receptor, DctP family n=1 Tax=Treponema socranskii subsp. socranskii VPI DR56BR1116 = ATCC 35536 RepID=U2LKU4_TRESO
TRAP-type transport system, periplasmic protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
TRAP-type transport system, periplasmic protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2142_16
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(16844..17167)
DNA (324bp) protein (108aa)
Transcriptional regulator, XRE family n=1 Tax=Geobacter sp. (strain M21) RepID=C6E135_GEOSM
XRE family transcriptional regulator Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
XRE family transcriptional regulator
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2142_17
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

17647..18126
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NSR2_9FIRM
Tripartite ATP-independent periplasmic transporter DctQ component Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
C4-dicarboxylate transport system, small permease component
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2142_18
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

18127..19410
DNA (1284bp) protein (428aa)
TRAP transporter, DctM subunit n=2 Tax=Treponema socranskii subsp. socranskii VPI DR56BR1116 = ATCC 35536 RepID=U1FIB8_TRESO
TRAP dicarboxylate transporter subunit DctM Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
TRAP dicarboxylate transporter subunit DctM
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2142_19
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(19413..21032)
DNA (1620bp) protein (540aa)
2-isopropylmalate synthase; K01649 2-isopropylmalate synthase [EC:2.3.3.13] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
2-isopropylmalate synthase n=1 Tax=Thermincola potens (strain JR) RepID=D5XAF0_THEPJ
2-isopropylmalate synthase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2142_20
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(21115..21873)
DNA (759bp) protein (253aa)
pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase (EC:2.7.8.8); K00998 phosphatidylserine synthase [EC:2.7.8.8] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
CDP-diacylglycerol-serine O-phosphatidyltransferase n=1 Tax=Nitrospina gracilis 3/211 RepID=M1ZE13_9BACT
CDP-diacylglycerol--serine O-phosphatidyltransferase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2142_21
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

Not on your lists

comp(21893..22528)
DNA (636bp) protein (212aa)
phosphatidylserine decarboxylase (EC:4.1.1.65); K01613 phosphatidylserine decarboxylase [EC:4.1.1.65] Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
phosphatidylserine decarboxylase (EC:4.1.1.65)
Phosphatidylserine decarboxylase proenzyme id=4878531 bin=GWC2_Nitrospirae-rel_56_14 species=delta proteobacterium MLMS-1 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2142_22
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

Not on your lists

comp(22670..23563)
DNA (894bp) protein (298aa)
ilvC; Ketol-acid reductoisomerase (EC:1.1.1.86); K00053 ketol-acid reductoisomerase [EC:1.1.1.86] Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
ilvC; Ketol-acid reductoisomerase (EC:1.1.1.86)
Ketol-acid reductoisomerase n=1 Tax=Nitrospina gracilis 3/211 RepID=M1YMR9_9BACT
Displaying 22 items

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