ggKbase home page

RIFCSPLOWO2_12_FULL_Gammaproteobacteria_47_76_rifcsplowo2_12_scaffold_10849

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_Gammaproteobacteria_47_76_rifcsplowo2_12_scaffold_10849_1
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1190
-----------------
DNA (1188bp)
protein (396aa)
DNA internalization-related competence protein ComEC/Rec2; K02238 competence protein ComEC Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
DNA internalization-related competence protein ComEC/Rec2 id=2001576 bin=GWE2_Gammaproteobacteria_37_16 species=Nitrosococcus oceani genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE2_Gammaproteobacteria_37_16 organism_group=Gammaproteobacteria organism_desc=Looks good, but small
DNA internalization-related competence protein ComEC/Rec2
RIFCSPLOWO2_12_FULL_Gammaproteobacteria_47_76_rifcsplowo2_12_scaffold_10849_2
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1338..1979
-----------------
DNA (642bp)
protein (214aa)
MotA/TolQ/ExbB proton channel n=1 Tax=Thiorhodospira sibirica ATCC 700588 RepID=G4E3P7_9GAMM
MotA/TolQ/ExbB proton channel; K03561 biopolymer transport protein ExbB Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
biopolymer transporter ExbB
RIFCSPLOWO2_12_FULL_Gammaproteobacteria_47_76_rifcsplowo2_12_scaffold_10849_3
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1976..2401
-----------------
DNA (426bp)
protein (142aa)
3-deoxy-manno-octulosonate cytidylyltransferase n=2 Tax=sulfur-oxidizing symbionts RepID=G2DB33_9GAMM
ExbD/TolR family protein Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
ExbD/TolR family protein
RIFCSPLOWO2_12_FULL_Gammaproteobacteria_47_76_rifcsplowo2_12_scaffold_10849_4
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2454..3458
-----------------
DNA (1005bp)
protein (335aa)
tetraacyldisaccharide 4'-kinase (EC:2.7.1.130); K00912 tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
Tetraacyldisaccharide 4'-kinase n=1 Tax=Beggiatoa alba B18LD RepID=I3CIU1_9GAMM
tetraacyldisaccharide-1-P 4'-kinase
RIFCSPLOWO2_12_FULL_Gammaproteobacteria_47_76_rifcsplowo2_12_scaffold_10849_5
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3439..3630
-----------------
DNA (192bp)
protein (64aa)
UPF0434 protein Thini_3688 n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BXU9_9GAMM
hypothetical protein; K09791 hypothetical protein Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
tetraacyldisaccharide 4'-kinase
RIFCSPLOWO2_12_FULL_Gammaproteobacteria_47_76_rifcsplowo2_12_scaffold_10849_6
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3642..4391
-----------------
DNA (750bp)
protein (250aa)
3-deoxy-manno-octulosonate cytidylyltransferase (EC:2.7.7.38) Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
3-deoxy-manno-octulosonate cytidylyltransferase (EC:2.7.7.38)
3-deoxy-manno-octulosonate cytidylyltransferase n=1 Tax=Francisella cf. novicida (strain 3523) RepID=F4BJZ7_FRACN
RIFCSPLOWO2_12_FULL_Gammaproteobacteria_47_76_rifcsplowo2_12_scaffold_10849_7
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4537..4842)
-----------------
DNA (306bp)
protein (102aa)
Translation initiation factor IF-1 n=1 Tax=Thiorhodovibrio sp. 970 RepID=H8Z352_9GAMM
translation initiation factor IF-1; K02518 translation initiation factor IF-1 Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
translation initiation factor IF-1
RIFCSPLOWO2_12_FULL_Gammaproteobacteria_47_76_rifcsplowo2_12_scaffold_10849_8
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4842..5564)
-----------------
DNA (723bp)
protein (241aa)
arginyl-tRNA-protein transferase; K00685 arginine-tRNA-protein transferase [EC:2.3.2.8] Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
Putative arginyl-tRNA--protein transferase n=1 Tax=Beggiatoa alba B18LD RepID=I3CGM5_9GAMM
arginyl-tRNA-protein arginylyltransferase
RIFCSPLOWO2_12_FULL_Gammaproteobacteria_47_76_rifcsplowo2_12_scaffold_10849_9
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5561..6286)
-----------------
DNA (726bp)
protein (242aa)
leucyl/phenylalanyl-tRNA/protein transferase (EC:2.3.2.6); K00684 leucyl/phenylalanyl-tRNA--protein transferase [EC:2.3.2.6] Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
leucyl/phenylalanyl-tRNA/protein transferase (EC:2.3.2.6)
Leucyl/phenylalanyl-tRNA--protein transferase n=1 Tax=Cellvibrio sp. BR RepID=I3I7C6_9GAMM
RIFCSPLOWO2_12_FULL_Gammaproteobacteria_47_76_rifcsplowo2_12_scaffold_10849_10
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6292..7431)
-----------------
DNA (1140bp)
protein (380aa)
Uncharacterized protein n=1 Tax=Beggiatoa alba B18LD RepID=I3CGY4_9GAMM
hypothetical protein Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Gammaproteobacteria_47_76_rifcsplowo2_12_scaffold_10849_11
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7475..7963)
-----------------
DNA (489bp)
protein (163aa)
Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
RIFCSPLOWO2_12_FULL_Gammaproteobacteria_47_76_rifcsplowo2_12_scaffold_10849_12
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8127..9125
-----------------
DNA (999bp)
protein (333aa)
Acetylspermidine deacetylase (EC:3.5.1.48) Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
acetylspermidine deacetylase (EC:3.5.1.48)
Acetylspermidine deacetylase n=1 Tax=Methylophaga nitratireducenticrescens (strain ATCC BAA-2433 / DSM 25689 / JAM1) RepID=I1XH03_METNJ
RIFCSPLOWO2_12_FULL_Gammaproteobacteria_47_76_rifcsplowo2_12_scaffold_10849_13
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9182..9523)
-----------------
DNA (342bp)
protein (114aa)
Uncharacterized protein n=1 Tax=gamma proteobacterium HIMB55 RepID=H3NRL4_9GAMM
hypothetical protein Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
conserved protein of unknown function
RIFCSPLOWO2_12_FULL_Gammaproteobacteria_47_76_rifcsplowo2_12_scaffold_10849_14
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9585..10865)
-----------------
DNA (1281bp)
protein (427aa)
aminobenzoyl-glutamate transporter n=1 Tax=Calothrix sp. PCC 7103 RepID=UPI0003081D9B
hypothetical protein Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
hypothetical protein
Displaying 14 items

View Taxonomy