ggKbase home page

RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_11143

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_11143_1
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

109..1134
DNA (1026bp) protein (342aa)
Tat pathway signal sequence domain protein id=4689023 bin=GWC2_Methylomirabilis_70_24 species=Acetobacteraceae bacterium AT-5844 genus=unknown taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
family 1 extracellular solute-binding protein; K02012 iron(III) transport system substrate-binding protein Tax=GWA2_Rokubacteria_70_23_curated
family 1 extracellular solute-binding protein
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_11143_2
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

1148..2914
DNA (1767bp) protein (589aa)
binding-protein-dependent transport systems inner membrane component; K02011 iron(III) transport system permease protein Tax=GWA2_Rokubacteria_70_23_curated
ABC transporter, permease protein id=4306926 bin=GWF2_Methylomirabilis_70_14 species=Acetobacteraceae bacterium AT-5844 genus=unknown taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC Fe3+ siderophore transporter, inner membrane subunit
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_11143_3
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

2911..3981
DNA (1071bp) protein (357aa)
ABC transporter; K02010 iron(III) transport system ATP-binding protein [EC:3.6.3.30] Tax=GWA2_Rokubacteria_70_23_curated
ABC transporter, ATP-binding protein id=4689025 bin=GWC2_Methylomirabilis_70_24 species=Acetobacteraceae bacterium AT-5844 genus=unknown taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Spermidine/putrescine ABC transporter ATPase subunit
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_11143_4
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

3978..4460
DNA (483bp) protein (161aa)
Carbon-nitrogen hydrolase family protein id=4177625 bin=GWC2_Methylomirabilis_70_16 species=Sphingomonas sp. S17 genus=Sphingomonas taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
FIG00948392: hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
aliphatic nitrilase
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_11143_5
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

4436..5170
DNA (735bp) protein (245aa)
Carbon-nitrogen hydrolase family protein id=4177625 bin=GWC2_Methylomirabilis_70_16 species=Sphingomonas sp. S17 genus=Sphingomonas taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
FIG00948392: hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
Nitrilase
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_11143_6
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

5247..6374
DNA (1128bp) protein (376aa)
2-hydroxyglutaryl-CoA dehydratase, D-component id=4177624 bin=GWC2_Methylomirabilis_70_16 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
2-hydroxyglutaryl-CoA dehydratase D-component Tax=GWC2_Rokubacteria_70_16_curated
2-hydroxyglutaryl-CoA dehydratase D-component
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_11143_7
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

6388..7719
DNA (1332bp) protein (444aa)
2-hydroxyglutaryl-CoA dehydratase, D-component id=4177623 bin=GWC2_Methylomirabilis_70_16 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB Tax=GWC2_Rokubacteria_70_16_curated
Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_11143_8
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

7719..9455
DNA (1737bp) protein (579aa)
CoA enzyme activase Tax=GWC2_Rokubacteria_70_16_curated
Putative benzoyl-CoA reductase, subunit D id=4177622 bin=GWC2_Methylomirabilis_70_16 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
CoA enzyme activase
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_11143_9
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

9477..11174
DNA (1698bp) protein (566aa)
ditJ; DitJ-like CoA ligase; K02182 crotonobetaine/carnitine-CoA ligase [EC:6.2.1.-] Tax=GWC2_Rokubacteria_70_16_curated
Long-chain-fatty-acid--CoA ligase id=4177621 bin=GWC2_Methylomirabilis_70_16 species=Mycobacterium vaccae genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ditJ; DitJ-like CoA ligase
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_11143_10
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

11252..12244
DNA (993bp) protein (331aa)
D-cysteine desulfhydrase; K05396 D-cysteine desulfhydrase [EC:4.4.1.15] Tax=GWC2_Rokubacteria_70_16_curated
1-aminocyclopropane-1-carboxylate deaminase id=4177620 bin=GWC2_Methylomirabilis_70_16 species=Ramlibacter tataouinensis genus=Ramlibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
dcyD; D-cysteine desulfhydrase
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_11143_11
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

12241..13425
DNA (1185bp) protein (395aa)
FAD dependent oxidoreductase (EC:1.5.3.1) Tax=GWC2_Rokubacteria_70_16_curated
FAD dependent oxidoreductase id=4177619 bin=GWC2_Methylomirabilis_70_16 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
FAD-dependent oxidoreductase
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_11143_12
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(13436..13726)
DNA (291bp) protein (97aa)
Carboxymuconolactone decarboxylase id=4177618 bin=GWC2_Methylomirabilis_70_16 species=Mycobacterium tusciae genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Carboxymuconolactone decarboxylase Tax=GWC2_Rokubacteria_70_16_curated
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_11143_13
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(13778..14035)
DNA (258bp) protein (86aa)
id=4177617 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
id=4177617 Tax=GWC2_Rokubacteria_70_16_curated
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_11143_14
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(14104..14664)
DNA (561bp) protein (187aa)
AMP-dependent synthetase and ligase; K02182 crotonobetaine/carnitine-CoA ligase [EC:6.2.1.-] Tax=GWC2_Rokubacteria_70_16_curated
AMP-binding enzyme id=4177616 bin=GWC2_Methylomirabilis_70_16 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
AMP-binding protein
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_11143_15
unknown

Not on your lists

15058..15363
DNA (306bp) protein (102aa)

This feature has no annotations

RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_11143_16
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

15847..16287
DNA (441bp) protein (147aa)
propionyl-CoA carboxylase (EC:6.4.1.3) Tax=GWC2_Rokubacteria_70_16_curated
propionyl-CoA carboxylase (EC:6.4.1.3)
Propionyl-CoA carboxylase id=4177615 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Displaying 16 items

View Taxonomy