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RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_9742

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_9742_1
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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2..226
DNA (225bp) protein (75aa)
putative polysaccharide export protein Tax=GWC2_Rokubacteria_70_16_curated
Polysaccharide export protein id=3362667 bin=GWF2_Methylomirabilis_70_14 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_9742_2
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

427..792
DNA (366bp) protein (122aa)
acpS; 4'-phosphopantetheinyl transferase; K00997 holo-[acyl-carrier protein] synthase [EC:2.7.8.7] Tax=GWC2_Rokubacteria_70_16_curated
Holo-[acyl-carrier-protein] synthase id=4775567 bin=GWC2_Methylomirabilis_70_16 species=Streptomyces bingchenggensis genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
acpS; 4'-phosphopantetheinyl transferase
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_9742_3
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

792..1229
DNA (438bp) protein (146aa)
id=4775566 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
id=4775566 Tax=GWC2_Rokubacteria_70_16_curated
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_9742_4
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

1226..2485
DNA (1260bp) protein (420aa)
Beta-ketoacyl synthase id=4775565 bin=GWC2_Methylomirabilis_70_16 species=Jonquetella anthropi genus=Jonquetella taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
beta-ketoacyl synthase Tax=GWC2_Rokubacteria_70_16_curated
beta-ketoacyl synthase
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_9742_5
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

2475..3221
DNA (747bp) protein (249aa)
3-oxoacyl-(acyl-carrier-protein) reductase; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] Tax=GWC2_Rokubacteria_70_16_curated
3-oxoacyl-(Acyl-carrier protein) reductase id=4775564 bin=GWC2_Methylomirabilis_70_16 species=Clostridium ultunense genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
3-oxoacyl-(acyl-carrier-protein) reductase
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_9742_6
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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3239..3847
DNA (609bp) protein (203aa)
Acyl carrier protein id=4775563 bin=GWC2_Methylomirabilis_70_16 species=Pirellula staleyi genus=Pirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
phosphopantetheine-binding protein Tax=GWC2_Rokubacteria_70_16_curated
phosphopantetheine-binding protein
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_9742_7
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

3864..4349
DNA (486bp) protein (162aa)
(3R)-hydroxymyristoyl-ACP dehydratase; K02372 3R-hydroxymyristoyl ACP dehydrase [EC:4.2.1.-] Tax=GWC2_Rokubacteria_70_16_curated
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ id=4775562 bin=GWC2_Methylomirabilis_70_16 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
(3R)-hydroxymyristoyl-ACP dehydratase
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_9742_8
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

4346..5101
DNA (756bp) protein (252aa)
short-chain dehydrogenase/reductase SDR; K10780 enoyl-[acyl carrier protein] reductase III [EC:1.3.1.-] Tax=GWC2_Rokubacteria_70_16_curated
Enoyl-[acyl-carrier-protein] reductase [NADH] id=4775561 bin=GWC2_Methylomirabilis_70_16 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
short-chain dehydrogenase/reductase SDR
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_9742_9
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

5112..6395
DNA (1284bp) protein (428aa)
3-oxoacyl-(acyl-carrier-protein) synthase II (EC:2.3.1.41); K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] Tax=GWC2_Rokubacteria_70_16_curated
3-oxoacyl-(acyl-carrier-protein) synthase II (EC:2.3.1.41)
3-oxoacyl-[acyl-carrier-protein] synthase 2 id=4775560 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_9742_10
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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6385..7323
DNA (939bp) protein (313aa)
family 2 glycosyl transferase; K10012 undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.7.8.30] Tax=GWC2_Rokubacteria_70_16_curated
Glycosyl transferase family 2 id=4775559 bin=GWC2_Methylomirabilis_70_16 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
family 2 glycosyl transferase
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_9742_11
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

7320..8267
DNA (948bp) protein (316aa)
NAD-dependent epimerase/dehydratase; K10011 UDP-4-amino-4-deoxy-L-arabinose formyltransferase / UDP-glucuronic acid dehydrogenase (UDP-4-keto-hexauronic acid decarboxylating) [EC:2.1.2.13 1.1.1.305] T
Bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase id=4775558 bin=GWC2_Methylomirabilis_70_16 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_9742_12
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

8264..9223
DNA (960bp) protein (320aa)
NAD-dependent epimerase/dehydratase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2] Tax=GWC2_Rokubacteria_70_16_curated
NAD-dependent epimerase/dehydratase id=4775557 bin=GWC2_Methylomirabilis_70_16 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
NAD-dependent epimerase/dehydratase
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_9742_13
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

9199..10104
DNA (906bp) protein (302aa)
Polysaccharide deacetylase id=4775556 bin=GWC2_Methylomirabilis_70_16 species=Aminomonas paucivorans genus=Aminomonas taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
polysaccharide deacetylase Tax=GWC2_Rokubacteria_70_16_curated
polysaccharide deacetylase
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_9742_14
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

10105..10623
DNA (519bp) protein (173aa)
id=4775555 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
id=4775555 Tax=GWC2_Rokubacteria_70_16_curated
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_9742_15
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

10623..11414
DNA (792bp) protein (264aa)
Tol-pal system protein YbgF id=4775527 bin=GWC2_Methylomirabilis_70_16 species=Desulfurobacterium thermolithotrophum genus=Desulfurobacterium taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
tol-pal system protein YbgF Tax=GWC2_Rokubacteria_70_16_curated
tol-pal system protein YbgF
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_9742_16
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(11434..12000)
DNA (567bp) protein (189aa)
Putative Transcription termination/antitermination factor NusG id=4775526 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative transcription termination/antitermination factor NusG Tax=GWC2_Rokubacteria_70_16_curated
putative transcription termination/antitermination factor NusG
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_9742_trna_1
unknown

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12330..12403
DNA (74bp)
transferRNA
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_9742_17
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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12881..15439
DNA (2559bp) protein (853aa)
adenylate cyclase (EC:4.6.1.1) Tax=GWC2_Rokubacteria_70_16_curated
Putative adenylate cyclase; with Tetratricopeptide TPR_4 motifs for protein-protein interaction id=4775525 bin=GWC2_Methylomirabilis_70_16 species=Cupriavidus taiwanensis genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_9742_18
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(15500..15772)
DNA (273bp) protein (91aa)
Putative uncharacterized protein id=4775524 bin=GWC2_Methylomirabilis_70_16 species=ACD28 genus=ACD28 taxon_order=ACD28 taxon_class=ACD28 phylum=PER tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_9742_19
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(15747..16052)
DNA (306bp) protein (102aa)
Uncharacterized protein id=4775523 bin=GWC2_Methylomirabilis_70_16 species=gamma proteobacterium BDW918 genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein; K09803 hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_9742_20
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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16353..17474
DNA (1122bp) protein (374aa)
ABC-type uncharacterized transport system, periplasmic component id=4775522 bin=GWC2_Methylomirabilis_70_16 species=Bradyrhizobium sp. CCGE-LA001 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein; K01989 putative ABC transport system substrate-binding protein Tax=GWC2_Rokubacteria_70_16_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_9742_21
unknown

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17573..17656
DNA (84bp) protein (28aa)

This feature has no annotations

Displaying 22 items

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