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RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_25254

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_25254_1
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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comp(3..470)
-----------------
DNA (468bp)
protein (156aa)
two component system sensor histidine kinase (EC:2.7.13.3) Tax=GWA2_Rokubacteria_70_23_curated
two component system sensor histidine kinase (EC:2.7.13.3)
Two component system sensor histidine kinase id=2654076 bin=GWC2_Methylomirabilis_70_24 species=Desulfobacula toluolica genus=Desulfobacula taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_25254_2
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(478..1902)
-----------------
DNA (1425bp)
protein (475aa)
ABC-type dipeptide transport system, periplasmic component Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
ABC-type dipeptide transport system, periplasmic component id=2654072 bin=GWC2_Methylomirabilis_70_24 species=Halobacteroides halobius genus=Halobacteroides taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
ABC-type dipeptide transport system, periplasmic component
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_25254_3
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(2166..2303)
-----------------
DNA (138bp)
protein (46aa)
id=14627448 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
id=14627448 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_25254_4
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(2526..3923)
-----------------
DNA (1398bp)
protein (466aa)
two component system response regulator, sigma54-specific Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
two component system response regulator, sigma54-specific id=14627447 bin=bin7_NC10_sister species=Desulfurispora thermophila genus=Desulfurispora taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
two component system response regulator, sigma54-specific
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_25254_5
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

4036..4800
-----------------
DNA (765bp)
protein (255aa)
hypothetical protein; K05807 putative lipoprotein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
hypothetical protein; K05807 putative lipoprotein id=14627446 bin=bin7_NC10_sister species=Thalassiobium sp. R2A62 genus=Thalassobium taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_25254_6
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

4805..5842
-----------------
DNA (1038bp)
protein (346aa)
threonine aldolase; K01620 threonine aldolase [EC:4.1.2.5] id=14627445 bin=bin7_NC10_sister species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
threonine aldolase; K01620 threonine aldolase [EC:4.1.2.5] Tax=CSP1_6_Rokubacteria
threonine aldolase
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_25254_7
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

5942..6919
-----------------
DNA (978bp)
protein (326aa)
oligopeptide ABC transporter ATP-binding protein; K02031 peptide/nickel transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
oligopeptide ABC transporter ATP-binding protein; K02031 peptide/nickel transport system ATP-binding protein id=14627444 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
oligopeptide ABC transporter ATP-binding protein
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_25254_8
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

6986..7189
-----------------
DNA (204bp)
protein (68aa)
id=14627443 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
id=14627443 Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_25254_9
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

7436..8407
-----------------
DNA (972bp)
protein (324aa)
peptide ABC transporter ATP-binding protein; K02032 peptide/nickel transport system ATP-binding protein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
peptide ABC transporter ATP-binding protein; K02032 peptide/nickel transport system ATP-binding protein id=14627442 bin=bin7_NC10_sister species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
peptide ABC transporter ATP-binding protein
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_25254_10
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

8469..9218
-----------------
DNA (750bp)
protein (250aa)
hypothetical protein id=14627441 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_25254_11
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

9416..10216
-----------------
DNA (801bp)
protein (267aa)
esterase/lipase Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
esterase/lipase id=14627440 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
esterase/lipase
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_25254_12
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

10213..10662
-----------------
DNA (450bp)
protein (150aa)
id=14627439 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
id=14627439 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_25254_13
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(10797..11681)
-----------------
DNA (885bp)
protein (295aa)
peptidase M23 id=14627438 bin=bin7_NC10_sister species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
peptidase M23 Tax=CSP1_6_Rokubacteria
peptidase M23
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_25254_14
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(11784..12200)
-----------------
DNA (417bp)
protein (139aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
hypothetical protein id=14627437 bin=bin7_NC10_sister species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_25254_15
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(12201..12680)
-----------------
DNA (480bp)
protein (160aa)
hypothetical protein id=14627436 bin=bin7_NC10_sister species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_25254_16
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(12762..12965)
-----------------
DNA (204bp)
protein (68aa)
id=14627435 Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
id=14627435 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_25254_17
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

13160..14332
-----------------
DNA (1173bp)
protein (391aa)
PLP-dependent aminotransferase, putative aspartate aminotransferase (EC:2.6.1.- 2.6.1.1) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLP-dependent aminotransferase, putative aspartate aminotransferase (EC:2.6.1.- 2.6.1.1) id=14627617 bin=bin7_NC10_sister species=Thioalkalivibrio sp. ALSr1 genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
PLP-dependent aminotransferase, putative aspartate aminotransferase (EC:2.6.1.- 2.6.1.1)
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_25254_18
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

14590..15912
-----------------
DNA (1323bp)
protein (441aa)
homoserine dehydrogenase (HDH): ThrA, MetL (EC:1.1.1.3); K00003 homoserine dehydrogenase [EC:1.1.1.3] id=14627618 bin=bin7_NC10_sister species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
homoserine dehydrogenase (HDH): ThrA, MetL (EC:1.1.1.3); K00003 homoserine dehydrogenase [EC:1.1.1.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
homoserine dehydrogenase ThrA (EC:1.1.1.3)
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_25254_19
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

15965..17023
-----------------
DNA (1059bp)
protein (353aa)
L-threonine synthase (EC:4.2.3.1) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
L-threonine synthase (EC:4.2.3.1) id=14627619 bin=bin7_NC10_sister species=Chthonomonas calidirosea genus=Chthonomonas taxon_order=Chthonomonadales taxon_class=Chthonomonadetes phylum=Armatimonadetes tax=bin7_NC10_sister organism_group=NC10
L-threonine synthase (EC:4.2.3.1)
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_25254_20
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

17035..17949
-----------------
DNA (915bp)
protein (305aa)
hypothetical protein; K07027 id=14627620 bin=bin7_NC10_sister species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
hypothetical protein; K07027 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
hypothetical protein
Displaying 20 items

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