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RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_9873

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_9873_1
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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3..545
DNA (543bp) protein (181aa)
sigW5; ECF subfamily RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
sigW5; ECF subfamily RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily id=14626920 bin=bin7_NC10_sister species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=bin7_NC10_sister organism_group=NC10
sigW5; ECF subfamily RNA polymerase sigma factor
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_9873_2
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

683..1231
DNA (549bp) protein (183aa)
prdB; putative D-proline reductase gamma subunit (EC:1.21.4.1) id=14626919 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
prdB; putative D-proline reductase gamma subunit (EC:1.21.4.1) Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_9873_3
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

1259..1546
DNA (288bp) protein (96aa)
D-proline reductase (EC:1.21.4.1) id=14626918 bin=bin7_NC10_sister species=Geopsychrobacter electrodiphilus genus=Geopsychrobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
D-proline reductase (EC:1.21.4.1) Tax=CSP1_6_Rokubacteria
prdB; D-proline reductase (dithiol) PrdB
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_9873_4
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists


1717..2028
DNA (312bp) protein (104aa)
50S ribosomal protein L21; K02888 large subunit ribosomal protein L21 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
50S ribosomal protein L21; K02888 large subunit ribosomal protein L21 id=14626917 bin=bin7_NC10_sister species=Sporomusa ovata genus=Sporomusa taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
50S ribosomal protein L21
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_9873_5
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists


2033..2290
DNA (258bp) protein (86aa)
50S ribosomal protein L27; K02899 large subunit ribosomal protein L27 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
50S ribosomal protein L27; K02899 large subunit ribosomal protein L27 id=14626916 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=bin7_NC10_sister organism_group=NC10
50S ribosomal protein L27
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_9873_6
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

2319..3320
DNA (1002bp) protein (334aa)
GTPase obg; K03979 GTP-binding protein id=14626915 bin=bin7_NC10_sister species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
GTPase obg; K03979 GTP-binding protein Tax=CSP1_6_Rokubacteria
GTPase obg
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_9873_7
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

3442..4605
DNA (1164bp) protein (388aa)
gamma-glutamyl kinase; K00931 glutamate 5-kinase [EC:2.7.2.11] id=14626914 bin=bin7_NC10_sister species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
gamma-glutamyl kinase; K00931 glutamate 5-kinase [EC:2.7.2.11] Tax=CSP1_6_Rokubacteria
gamma-glutamyl kinase
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_9873_8
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

4624..5880
DNA (1257bp) protein (419aa)
proA; gamma-glutamylphosphate reductase (EC:1.2.1.41) id=14626913 bin=bin7_NC10_sister species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
proA; gamma-glutamylphosphate reductase (EC:1.2.1.41) Tax=CSP1_6_Rokubacteria
proA; gamma-glutamylphosphate reductase (EC:1.2.1.41)
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_9873_9
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

5888..6556
DNA (669bp) protein (223aa)
nadD; nicotinate (nicotinamide) nucleotide adenylyltransferase (EC:2.7.7.18); K00969 nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
nadD; nicotinate (nicotinamide) nucleotide adenylyltransferase (EC:2.7.7.18); K00969 nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] id=14626912 bin=bin7_NC10_sister species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
nadD; nicotinate (nicotinamide) nucleotide adenylyltransferase (EC:2.7.7.18)
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_9873_10
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

6556..6909
DNA (354bp) protein (118aa)
Iojap-related protein; K09710 ribosome-associated protein id=14626911 bin=bin7_NC10_sister species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
Iojap-related protein; K09710 ribosome-associated protein Tax=CSP1_6_Rokubacteria
Iojap-related protein
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_9873_11
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

6994..7359
DNA (366bp) protein (122aa)
transcriptional regulators, TraR/DksA family Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
transcriptional regulators, TraR/DksA family id=14626910 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
transcriptional regulators, TraR/DksA family
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_9873_12
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

7369..8655
DNA (1287bp) protein (429aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
hypothetical protein id=14626909 bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_9873_13
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

8666..9403
DNA (738bp) protein (246aa)
competence protein F Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
Amidophosphoribosyltransferase, putative id=3966260 bin=GWA2_Elusimicrobia_69_24 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
amidophosphoribosyltransferase
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_9873_14
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

9491..10495
DNA (1005bp) protein (335aa)
cbbG; glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
cbbG; glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12)
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) id=4828186 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_9873_15
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

10518..11723
DNA (1206bp) protein (402aa)
3-phosphoglycerate kinase (EC:2.7.2.3) Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
3-phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase id=4828185 bin=GWC2_Methylomirabilis_70_16 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_9873_16
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

11723..12502
DNA (780bp) protein (260aa)
tpiA; triosephosphate isomerase (EC:5.3.1.1); K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
tpiA; triosephosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase id=4828184 bin=GWC2_Methylomirabilis_70_16 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_9873_17
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

12506..12805
DNA (300bp) protein (100aa)
preprotein translocase subunit SecG; K03075 preprotein translocase subunit SecG Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
SecG id=3340670 bin=GWC2_Methylomirabilis_70_24 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
preprotein translocase subunit SecG
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_9873_18
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

12802..14451
DNA (1650bp) protein (550aa)
oligopeptide-binding protein; K02035 peptide/nickel transport system substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Oligopeptide-binding protein id=3340669 bin=GWC2_Methylomirabilis_70_24 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
oligopeptide-binding protein
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_9873_19
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

14549..15541
DNA (993bp) protein (331aa)
binding-protein-dependent transport system inner membrane protein; K02033 peptide/nickel transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Binding-protein-dependent transport systems inner membrane component id=4787931 bin=GWA2_Methylomirabilis_73_35 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
binding-protein-dependent transport system inner membrane protein
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_9873_20
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

15546..16436
DNA (891bp) protein (297aa)
binding-protein dependent transport system inner membrane protein; K02034 peptide/nickel transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Binding-protein-dependent transport systems inner membrane component id=4828180 bin=GWC2_Methylomirabilis_70_16 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
peptide ABC transporter membrane protein
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_9873_21
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

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comp(16554..18002)
DNA (1449bp) protein (483aa)
Integrase catalytic subunit Tax=RBG_16_Chloroflexi_64_32_curated
Integrase catalytic subunit id=17266943 bin=RBG_16_Aminicenantes_66_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_16_Aminicenantes_66_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
integrase catalytic subunit
Displaying 21 items

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