ggKbase home page

RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_41254

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_41254_1
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(452..1822)
DNA (1371bp) protein (457aa)
hypothetical protein
alias=16ft_combo_ws3_scaffold_11273_12 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
alias=16ft_combo_ws3_scaffold_11273_12 id=14625152 bin=bin7_NC10_sister species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=bin7_NC10_sister organism_group=NC10
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_41254_2
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(2779..3078)
DNA (300bp) protein (100aa)
hypothetical protein id=14625150 bin=bin7_NC10_sister species=Nitrolancetus hollandicus genus=Nitrolancetus taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_41254_3
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(3088..3672)
DNA (585bp) protein (195aa)
cytochrome c oxidase subunit III; K02299 cytochrome o ubiquinol oxidase subunit III [EC:1.10.3.-] Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
cytochrome c oxidase subunit III; K02299 cytochrome o ubiquinol oxidase subunit III [EC:1.10.3.-] id=14625149 bin=bin7_NC10_sister species=Truepera radiovictrix genus=Truepera taxon_order=Deinococcales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=bin7_NC10_sister organism_group=NC10
cytochrome c oxidase subunit III
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_41254_4
unknown

Not on your lists

4002..4205
DNA (204bp) protein (68aa)

This feature has no annotations

RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_41254_5
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

4248..4349
DNA (102bp) protein (34aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_41254_6
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

4437..4871
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1TGP8_9BURK
Uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_41254_7
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

4923..5144
DNA (222bp) protein (74aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_41254_8
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(5646..6641)
DNA (996bp) protein (332aa)
cytochrome c oxidase subunit II (EC:1.9.3.1); K02275 cytochrome c oxidase subunit II [EC:1.9.3.1] id=14625147 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
cytochrome c oxidase subunit II (EC:1.9.3.1); K02275 cytochrome c oxidase subunit II [EC:1.9.3.1] Tax=CSP1_6_Rokubacteria
cytochrome c oxidase subunit II (EC:1.9.3.1)
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_41254_9
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(6647..7171)
DNA (525bp) protein (175aa)
cyclic nucleotide-binding protein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
cyclic nucleotide-binding protein id=14625146 bin=bin7_NC10_sister species=Herbaspirillum sp. JC206 genus=Herbaspirillum taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
Cyclic nucleotide-binding domain
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_41254_10
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(7176..8408)
DNA (1233bp) protein (411aa)
glutamate dehydrogenase; K00261 glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
glutamate dehydrogenase; K00261 glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] id=14625145 bin=bin7_NC10_sister species=Myxococcus fulvus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
glutamate dehydrogenase
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_41254_11
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(8567..9790)
DNA (1224bp) protein (408aa)
hydantoinase/carbamoylase family amidase (EC:3.5.1.87); K06016 N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.87] id=14625144 bin=bin7_NC10_sister species=Nitrosococcus halophilus genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hydantoinase/carbamoylase family amidase (EC:3.5.1.87); K06016 N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.87] Tax=CSP1_6_Rokubacteria
hydantoinase/carbamoylase family amidase (EC:3.5.1.87)
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_41254_12
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

9906..11102
DNA (1197bp) protein (399aa)
acyl-CoA dehydrogenase domain-containing protein id=14625143 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
acyl-CoA dehydrogenase domain-containing protein Tax=CSP1_6_Rokubacteria
acyl-CoA dehydrogenase domain-containing protein
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_41254_13
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

11190..12329
DNA (1140bp) protein (380aa)
putative acyl-CoA dehydrogenase (EC:1.3.99.-) id=14625142 bin=bin7_NC10_sister species=Frankia sp. CN3 genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
putative acyl-CoA dehydrogenase (EC:1.3.99.-) Tax=CSP1_6_Rokubacteria
putative acyl-CoA dehydrogenase (EC:1.3.99.-)
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_41254_14
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

12336..13151
DNA (816bp) protein (272aa)
nudix hydrolase Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
beta-lactamase id=14625141 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hydrolase, beta-lactamase-like
RIFCSPLOWO2_12_FULL_NC10_sister_69_21_rifcsplowo2_12_scaffold_41254_15
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

13153..13818
DNA (666bp) protein (222aa)
lactb2; lactamase, beta 2 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
metallo-beta-lactamase superfamily protein; K15318 hydrolase id=14625140 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
blaB; metallo-beta-lactamase family protein
Displaying 15 items

View Taxonomy