ggKbase home page

RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_1059

Search features with annotation key words

Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_1059_1
Pseudomonas sp. GM21, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..117
DNA (117bp) protein (39aa)
cydB; cytochrome d ubiquinol oxidase, subunit II (EC:1.10.3.-)
ubiquinol oxidase subunit II, cyanide insensitive n=1 Tax=Pseudomonas sp. CBZ-4 RepID=UPI000346ADFA
Cytochrome d oxidase cyd, subunit II {ECO:0000313|EMBL:EJM17044.1}; Flags: Precursor;; TaxID=1144325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomo
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_1059_2
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

130..294
DNA (165bp) protein (55aa)
Uncharacterized protein n=3 Tax=Pseudomonas RepID=I4K2A1_PSEFL
hypothetical protein Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_1059_3
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(344..1468)
DNA (1125bp) protein (375aa)
rlmG; ribosomal RNA large subunit methyltransferase G (EC:2.1.1.174)
rlmG; ribosomal RNA large subunit methyltransferase G (EC:2.1.1.174) Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
Ribosomal RNA large subunit methyltransferase G n=3 Tax=Pseudomonas RepID=I2BW34_PSEFL
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_1059_4
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1607..2317)
DNA (711bp) protein (237aa)
Putative LuxR family regulatory protein n=1 Tax=Pseudomonas sp. CF150 RepID=S6J3Y8_9PSED
autoinducer-binding transcriptional regulator Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
autoinducer-binding transcriptional regulator
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_1059_5
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2754..3530
DNA (777bp) protein (259aa)
fpr_1; ferredoxin--NADP reductase (EC:1.18.1.2) Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
fpr_1; ferredoxin--NADP reductase (EC:1.18.1.2)
Ferredoxin--NADP reductase n=1 Tax=Pseudomonas sp. CFT9 RepID=S6H848_9PSED
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_1059_6
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3572..3988)
DNA (417bp) protein (139aa)
Large-conductance mechanosensitive channel n=1 Tax=Pseudomonas fluorescens A506 RepID=I2BKQ4_PSEFL
mscL; large conductance mechanosensitive channel protein
Large-conductance mechanosensitive channel {ECO:0000256|HAMAP-Rule:MF_00115, ECO:0000256|SAAS:SAAS00023935}; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseu
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_1059_7
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4276..5817
DNA (1542bp) protein (514aa)
katB; catalase KatB (EC:1.11.1.6) Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
katB; catalase KatB (EC:1.11.1.6)
Catalase n=1 Tax=Pseudomonas sp. CF150 RepID=S6KHL8_9PSED
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_1059_8
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5875..6414
DNA (540bp) protein (180aa)
Ankyrin repeat protein n=3 Tax=Pseudomonas RepID=I2BKD7_PSEFL
ankyrin
Uncharacterized protein {ECO:0000313|EMBL:AFJ54720.1}; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluor
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_1059_9
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6450..7817
DNA (1368bp) protein (456aa)
DNA repair protein radA n=2 Tax=Pseudomonas RepID=I4K656_PSEFL
radA; DNA repair protein RadA Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
radA; DNA repair protein RadA rbh
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_1059_10
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7946..8314)
DNA (369bp) protein (123aa)
Cyclic diguanosine monophosphate-binding protein n=1 Tax=Pseudomonas sp. CF150 RepID=S6J6R2_9PSED
type IV pilus assembly protein, PilZ family Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
type IV pilus assembly protein, PilZ family
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_1059_11
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8489..10555
DNA (2067bp) protein (689aa)
Carbon starvation protein CstA n=2 Tax=Pseudomonas RepID=I2BLJ7_PSEFL
cstA; carbon starvation protein CstA
CstA protein {ECO:0000313|EMBL:AFJ55130.1}; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_1059_12
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10571..10768
DNA (198bp) protein (66aa)
Uncharacterized protein n=6 Tax=Pseudomonas RepID=I2BWB4_PSEFL
putative small protein yjiX
Putative small protein yjiX {ECO:0000313|EMBL:AKA82718.1}; Strain 2-79 PFLU3_contig000014, whole genome shotgun sequence {ECO:0000313|EMBL:KIR22351.1}; TaxID=294 species="Bacteria; Proteobacteria; Gam
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_1059_13
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10952..11908
DNA (957bp) protein (319aa)
GTP-binding protein, YjiA family n=3 Tax=Pseudomonas RepID=I2BYM3_PSEFL
yjiA; GTP-binding protein, YjiA family
yjiA; GTP-binding protein, YjiA family Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_1059_14
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12098..13351)
DNA (1254bp) protein (418aa)
glyA_1; serine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAM
Serine hydroxymethyltransferase n=4 Tax=Pseudomonas RepID=I2BLN5_PSEFL
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_1059_15
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13587..17438)
DNA (3852bp) protein (1284aa)
Developmental regulator MorA n=2 Tax=Pseudomonas RepID=I2BNQ6_PSEFL
morA; developmental regulator MorA Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
morA; developmental regulator MorA
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_1059_16
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17724..19388
DNA (1665bp) protein (555aa)
ATP-binding cassette protein, ChvD family n=3 Tax=Pseudomonas RepID=I2BQ09_PSEFL
ChvD family ATP-binding protein
ChvD family ATP-binding protein Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_1059_17
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19455..20384)
DNA (930bp) protein (310aa)
LysR family transcriptional regulator n=1 Tax=Pseudomonas sp. CFT9 RepID=S6IPB5_9PSED
LysR family transcriptional regulator Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
LysR family transcriptional regulator
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_1059_18
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20480..21673
DNA (1194bp) protein (398aa)
Major facilitator superfamily protein superfamily n=1 Tax=Pseudomonas sp. CF150 RepID=S6JBY5_9PSED
major facilitator family transporter Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
major facilitator family transporter
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_1059_19
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21708..22532
DNA (825bp) protein (275aa)
Uncharacterized protein n=2 Tax=Pseudomonas RepID=S6H2N3_9PSED
hypothetical protein Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_1059_20
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22565..23782
DNA (1218bp) protein (406aa)
Major facilitator family protein n=1 Tax=Pseudomonas sp. CFT9 RepID=S6H831_9PSED
major facilitator family transporter Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
major facilitator family transporter rbh
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_1059_21
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23822..25051
DNA (1230bp) protein (410aa)
Aminotransferase n=1 Tax=Pseudomonas fluorescens A506 RepID=I2BS78_PSEFL
aminotransferase Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
aminotransferase
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_1059_22
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25076..25921
DNA (846bp) protein (282aa)
Uncharacterized protein n=2 Tax=Pseudomonas RepID=I2BVC5_PSEFL
hypothetical protein Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_1059_23
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25970..26860
DNA (891bp) protein (297aa)
aepX; phosphoenolpyruvate phosphomutase (EC:5.4.2.9) Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
aepX; phosphoenolpyruvate phosphomutase (EC:5.4.2.9) rbh
Putative phosphonopyruvate hydrolase n=1 Tax=Pseudomonas sp. CF150 RepID=S6JBZ0_9PSED
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_1059_24
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27207..28544
DNA (1338bp) protein (446aa)
gdhA; NADP-specific glutamate dehydrogenase (EC:1.4.1.4) Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
gdhA; NADP-specific glutamate dehydrogenase (EC:1.4.1.4)
Glutamate dehydrogenase n=1 Tax=Pseudomonas sp. CF150 RepID=S6J405_9PSED
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_1059_25
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28541..29038)
DNA (498bp) protein (166aa)
GreA/GreB family elongation factor, putative n=2 Tax=Pseudomonas RepID=I2BLH1_PSEFL
GreA/GreB family elongation factor rbh
GreA/GreB family elongation factor Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_1059_26
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29192..29548)
DNA (357bp) protein (119aa)
Putative lipoprotein n=2 Tax=Pseudomonas RepID=S6IDS3_9PSED
lipoprotein Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
lipoprotein
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_1059_27
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29746..31599)
DNA (1854bp) protein (618aa)
Uncharacterized protein n=2 Tax=Pseudomonas RepID=S6H2M7_9PSED
hypothetical protein Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
putative outermembrane protein rbh
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_1059_28
Pseudomonas synxantha, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31692..32180)
DNA (489bp) protein (163aa)
Uncharacterized protein n=5 Tax=Pseudomonas RepID=I2BUQ4_PSEFL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIK72440.1}; TaxID=96901 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas synxant
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_1059_29
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32444..34882
DNA (2439bp) protein (813aa)
ATP-dependent protease, putative n=2 Tax=Pseudomonas RepID=I2BQL7_PSEFL
ATP-dependent protease rbh
ATP-dependent protease Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_1059_30
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35197..35514
DNA (318bp) protein (106aa)
Uncharacterized protein n=4 Tax=Pseudomonas RepID=I4KCU2_PSEFL
hypothetical protein Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
hypothetical protein
Displaying items 1-30 of 51 in total

View Taxonomy