ggKbase home page

rifoxya1_sub10_scaffold_36

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifoxya1_sub10_scaffold_36_1
unknown

Not on your lists

71..205
DNA (135bp) protein (45aa)

This feature has no annotations

rifoxya1_sub10_scaffold_36_2
unknown

Not on your lists

234..695
DNA (462bp) protein (154aa)

This feature has no annotations

rifoxya1_sub10_scaffold_36_3
unknown

Not on your lists

697..834
DNA (138bp) protein (46aa)

This feature has no annotations

rifoxya1_sub10_scaffold_36_4
unknown

Not on your lists

1015..1275
DNA (261bp) protein (87aa)

This feature has no annotations

rifoxya1_sub10_scaffold_36_5
unknown

Not on your lists

1382..1756
DNA (375bp) protein (125aa)

This feature has no annotations

rifoxya1_sub10_scaffold_36_6

Not on your lists

1957..2133
DNA (177bp) protein (59aa)
Marine sediment metagenome DNA, contig: S01H1_S05993 {ECO:0000313|EMBL:GAG11156.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
alias=gwa2_scaffold_226_63 id=5042835 tax=GW2011_AR20 organism_desc=DELETE: see complete genome
rifoxya1_sub10_scaffold_36_7
RIFOXYC2_FULL_OD1_Nomurabacteria_36_19_curated, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

2130..3194
DNA (1065bp) protein (355aa)
adenine-specific methyltransferase Tax=RIFOXYC2_FULL_OD1_Nomurabacteria_36_19_curated
hap:HAPS_1954 ecoRIM; modification methylase (adenine-specificmethyltransferase) alias=ACD49_4141.76082.23G0065,ACD49_4141.76082.23_65,ACD49_C00007G00065 id=69232 tax=ACD49 species=Haemophilus parasuis genus=Haemophilus taxon_order=Pasteurellales taxon_class=Gammaproteobacteria phylum=Proteobacteria organism_group=BD1-5 organism_desc=BD1-5 rbh
modification methylase
rifoxya1_sub10_scaffold_36_8
R_RIF_OD1_09_43_27, RIF-OD1-9, Parcubacteria, Bacteria

Not on your lists

3220..4302
DNA (1083bp) protein (361aa)
HNH endonuclease Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_09_43_27_curated
HNH endonuclease
cpb:Cphamn1_1158 HNH endonuclease alias=ACD49_4141.76082.23G0066,ACD49_4141.76082.23_66,ACD49_C00007G00066 id=69263 tax=ACD49 species=Jonquetella anthropi genus=Jonquetella taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes organism_group=BD1-5 organism_desc=BD1-5 rbh
rifoxya1_sub10_scaffold_36_9
CG_Pacearch_01, Pacearchaeota, Archaea

Not on your lists

4457..6028
DNA (1572bp) protein (524aa)
Dead box RNA helicase n=2 Tax=Methanococcoides burtonii RepID=Q12UP5_METBU rbh
ATP-dependent RNA helicase Tax=CG_Pacearch_01
DEAD/DEAH box helicase-like protein
rifoxya1_sub10_scaffold_36_10
AR19, Pacearchaeaota, DPANN, Archaea

Not on your lists

comp(6029..6175)
DNA (147bp) protein (49aa)
transmembrane_regions Tax=AR19
rifoxya1_sub10_scaffold_36_11
GWE2_OD1_40_11, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(6203..6388)
DNA (186bp) protein (62aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR40698.1}; TaxID=1619033 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Yanofskybacteria) bacterium GW2011_GWE2_40_11.;"
hypothetical protein; K09779 hypothetical protein
Putative uncharacterized protein alias=gwe2_scaffold_308_6 id=1955915 tax=GWE2_OD1_40_11 species=Methanosaeta harundinacea 6Ac genus=Methanosaeta taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota
rifoxya1_sub10_scaffold_36_12
unknown

Not on your lists

comp(6445..6684)
DNA (240bp) protein (80aa)

This feature has no annotations

rifoxya1_sub10_scaffold_36_13

Not on your lists

comp(6762..7097)
DNA (336bp) protein (112aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO48798.1}; TaxID=1579364 species="Archaea.;" source="archaeon GW2011_AR1.;"
RNA recognition motif-containing protein alias=ws6_closed_nogaps_final_838 id=5099591 tax=WS6_CLOSED species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria organism_desc=RuBisCO project complete genome
RNA-binding protein
rifoxya1_sub10_scaffold_36_14
RBG_13_Pacearchaeota_33_26_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

7313..7750
DNA (438bp) protein (146aa)
Transcriptional repressor NrdR n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-C06 RepID=N6WSL3_9EURY
nrdR; transcriptional regulator NrdR; K07738 transcriptional repressor NrdR Tax=RBG_13_Pacearchaeota_33_26_curated
transcriptional repressor nrdR
rifoxya1_sub10_scaffold_36_15
RBG_13_OD1_Falkowbacteria_36_9_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

7750..9939
DNA (2190bp) protein (730aa)
anaerobic ribonucleoside triphosphate reductase (EC:1.17.4.2); K00527 ribonucleoside-triphosphate reductase [EC:1.17.4.2] Tax=RBG_13_OD1_Falkowbacteria_36_9_curated
Anaerobic ribonucleoside-triphosphate reductase n=1 Tax=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) RepID=A4XHK8_CALS8 rbh
anaerobic ribonucleoside triphosphate reductase
rifoxya1_sub10_scaffold_36_16

Not on your lists

9950..10081
DNA (132bp) protein (44aa)
ribonucleoside-triphosphate reductase n=1 Tax=Hippea alviniae RepID=UPI0003B5564A
Ribonucleotide reductase of class III (Anaerobic), large subunit {ECO:0000313|EMBL:KKS32451.1}; TaxID=1618926 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC2_42_12.;"
hypothetical protein
rifoxya1_sub10_scaffold_36_17
Methanobacterium formicicum, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(10107..10820)
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Methanobacterium formicicum DSM 3637 RepID=K2R1X4_METFO rbh
Uncharacterized protein {ECO:0000313|EMBL:EKF86528.1}; TaxID=1204725 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobacterium.;" source="Methanobacte
rifoxya1_sub10_scaffold_36_18
RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated, Bacteroidetes, Bacteria

Not on your lists

10905..11669
DNA (765bp) protein (255aa)
Transposase-like protein n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MDA7_RHOM4
Transposase-like protein Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated
transposase-like protein
rifoxya1_sub10_scaffold_36_19
RBG_13_OD1_Moranbacteria_45_13_curated, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

11792..12496
DNA (705bp) protein (235aa)
anaerobic ribonucleoside-triphosphate reductase activating protein; K04069 pyruvate formate lyase activating enzyme [EC:1.97.1.4] Tax=RBG_13_OD1_Moranbacteria_45_13_curated
Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CVS9_9CLOT alias=ACD8_C00031G00002,ACD8_62643.5580.13G0002,ACD8_62643.5580.13_2 id=137205 tax=ACD8 species=Clostridium asparagiforme genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes organism_group=OD1-i organism_desc=OD1-i
pflA; pyruvate formate-lyase activating enzyme
rifoxya1_sub10_scaffold_36_20
CG_Pacearch_01, Pacearchaeota, Archaea

Not on your lists

12516..13721
DNA (1206bp) protein (402aa)
thymidylate synthase (FAD) (EC:2.1.1.148)
Thymidylate synthase n=1 Tax=Clostridium sp. CAG:470 RepID=R7FIK4_9CLOT
Thymidylate synthase Tax=CG_Pacearch_01
rifoxya1_sub10_scaffold_36_21
CG_Pacearch_03, Pacearchaeota, Archaea

Not on your lists

13718..14341
DNA (624bp) protein (208aa)
dihydrofolate reductase (EC:1.5.1.3); K00287 dihydrofolate reductase [EC:1.5.1.3] Tax=CG_Pacearch_03
tmk; thymidylate kinase (EC:2.7.4.9)
hypothetical protein n=1 Tax=candidate division YNPFFA RepID=UPI00036B8D80
rifoxya1_sub10_scaffold_36_22
GWE2_Bacteroidetes_29_8_curated, Bacteroidetes, Bacteria

Not on your lists

14390..15436
DNA (1047bp) protein (349aa)
CMP/dCMP deaminase zinc-binding protein; K01493 dCMP deaminase [EC:3.5.4.12] Tax=GWE2_Bacteroidetes_29_8_curated
dCMP deaminase (EC:3.5.4.12); K01493 dCMP deaminase [EC:3.5.4.12] alias=gwc2_scaffold_77_71 id=5090666 tax=PER_GWC2_33_13 organism_desc=RuBisCO project
hypothetical protein
rifoxya1_sub10_scaffold_36_23
RBG_13_Pacearchaeota_33_26_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

15474..15794
DNA (321bp) protein (107aa)
Thioredoxin n=1 Tax=Clostridium sp. CAG:91 RepID=R6VQR3_9CLOT
trx; thioredoxin; K03671 thioredoxin 1 Tax=RBG_13_Pacearchaeota_33_26_curated
thioredoxin
rifoxya1_sub10_scaffold_36_24
unknown

Not on your lists

15864..16502
DNA (639bp) protein (213aa)

This feature has no annotations

rifoxya1_sub10_scaffold_36_25

Not on your lists

16835..17041
DNA (207bp) protein (69aa)
DNA-directed RNA polymerase subunit H {ECO:0000313|EMBL:KHO50831.1}; EC=2.7.7.6 {ECO:0000313|EMBL:KHO50831.1};; TaxID=1579372 species="Archaea.;" source="archaeon GW2011_AR13.;"
rpoH; DNA-directed RNA polymerase subunit H (EC:2.7.7.6)
DNA-directed RNA polymerase subunit H n=11 Tax=Haloferax RepID=D4GZX3_HALVD
rifoxya1_sub10_scaffold_36_26
RBG_16_Pacearchaeota_35_8_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

17041..20292
DNA (3252bp) protein (1084aa)
DNA-directed RNA polymerase subunit B (EC:2.7.7.6) Tax=RBG_16_Pacearchaeota_35_8_curated
DNA-directed RNA polymerase subunit B (EC:2.7.7.6)
DNA-directed RNA polymerase n=2 Tax=Pyrococcus furiosus RepID=I6UQX5_9EURY rbh
rifoxya1_sub10_scaffold_36_27
RBG_13_Pacearchaeota_33_26_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

20298..23786
DNA (3489bp) protein (1163aa)
rpoA1; DNA-directed RNA polymerase subunit A' (EC:2.7.7.6); K03041 DNA-directed RNA polymerase subunit A' [EC:2.7.7.6] Tax=RBG_13_Pacearchaeota_33_26_curated
DNA-directed RNA polymerase alias=gwa2_scaffold_497_52 id=5044121 tax=GW2011_AR18 species=unknown genus=Methanobacterium taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota organism_desc=gwa2_.30_20c rbh
DNA-directed RNA polymerase
rifoxya1_sub10_scaffold_36_28
RBG_16_Pacearchaeota_35_8_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

23838..24257
DNA (420bp) protein (140aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000374B7B8
NusA family KH domain-containing protein; K02600 N utilization substance protein A Tax=RBG_16_Pacearchaeota_35_8_curated
rifoxya1_sub10_scaffold_36_29

Not on your lists


24303..24725
DNA (423bp) protein (141aa)
30S ribosomal protein S12 {ECO:0000256|RuleBase:RU004490}; TaxID=1579372 species="Archaea.;" source="archaeon GW2011_AR13.;"
rps12P; 30S ribosomal protein S12; K02950 small subunit ribosomal protein S12 alias=gwa2_scaffold_470_28 id=5043966 tax=GW2011_AR4 species=Methanopyrus kandleri genus=Methanopyrus taxon_order=Methanopyrales taxon_class=Methanopyri phylum=Euryarchaeota organism_desc=gwa2_.45_18
30S ribosomal protein S12
rifoxya1_sub10_scaffold_36_30
RBG_13_Pacearchaeota_33_26_curated, Pacearchaeota, DPANN, Archaea

Not on your lists


24722..25339
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003631D04
30S ribosomal protein S7P; K02992 small subunit ribosomal protein S7 Tax=RBG_13_Pacearchaeota_33_26_curated
30S ribosomal protein S7
Displaying items 1-30 of 39 in total

View Taxonomy