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rifoxya1_full_scaffold_2112

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifoxya1_full_scaffold_2112_1
unknown

Not on your lists

comp(184..591)
DNA (408bp) protein (136aa)

This feature has no annotations

rifoxya1_full_scaffold_2112_2
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

664..1302
DNA (639bp) protein (213aa)
peptidyl-prolyl cis-trans isomerase; K03775 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] Tax=CG_Woesearch_02
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037A6AAC
Peptidyl-prolyl cis-trans isomerase
rifoxya1_full_scaffold_2112_3
AR15, Woesearchaeaota, DPANN, Archaea

Not on your lists

1397..2485
DNA (1089bp) protein (363aa)
Cell division protein FtsZ Tax=AR15
Cell division protein FtsZ alias=AR15_final_v5_1190 id=5800713 tax=GW2011_AR15 species=sediment metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown
Cell division protein FtsZ
rifoxya1_full_scaffold_2112_4
unknown

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2490..2957
DNA (468bp) protein (156aa)

This feature has no annotations

rifoxya1_full_scaffold_2112_5
Methanothermobacter marburgensis, Methanothermobacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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2997..3326
DNA (330bp) protein (110aa)
Protein translocase subunit SecE n=1 Tax=Methanothermobacter marburgensis (strain DSM 2133 / 14651 / NBRC 100331 / OCM 82 / Marburg) RepID=D9PUG6_METTM
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; Protein transport protein Sec61 gamma subunit homolog {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=79929 species="Archaea; Euryarchaeota
SecE-related protein
rifoxya1_full_scaffold_2112_6
unknown

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3326..3844
DNA (519bp) protein (173aa)
LSU ribosomal protein L24A (Rpl24A) n=1 Tax=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) RepID=O29713_ARCFU Tax=AR20
LSU ribosomal protein L24A Rpl24A
nusG; transcription antitermination protein NusG; K02601 transcriptional antiterminator NusG alias=gwa2_scaffold_32_146 id=5040014 tax=GW2011_AR20 species=Archaeoglobus fulgidus genus=Archaeoglobus taxon_order=Archaeoglobales taxon_class=Archaeoglobi phylum=Euryarchaeota organism_desc=DELETE: see complete genome
rifoxya1_full_scaffold_2112_7

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3913..4557
DNA (645bp) protein (215aa)
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1579369 species="Archaea.;" source="archaeon GW2011_AR9.;"
50S ribosomal protein L11; K02867 large subunit ribosomal protein L11 alias=gwa2_scaffold_256_84 id=5043660 tax=GW2011_AR3 species=Methanothermus fervidus genus=Methanothermus taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L11
rifoxya1_full_scaffold_2112_8
unknown

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4763..5494
DNA (732bp) protein (244aa)

This feature has no annotations

rifoxya1_full_scaffold_2112_9
Methanotorris igneus, Methanotorris, Methanococcales, Methanococci, Euryarchaeota, Archaea

Not on your lists

comp(5495..7981)
DNA (2487bp) protein (829aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00017576}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00017588};; Alanyl-tRNA synthetase {ECO:0000256
Alanine--tRNA ligase n=1 Tax=Methanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5) RepID=F6BBG5_METIK
alanyl-tRNA synthetase
rifoxya1_full_scaffold_2112_10

Not on your lists

comp(8043..8861)
DNA (819bp) protein (273aa)
serB-1; putative phosphoserine phosphatase (EC:3.1.3.3)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003820D3D
Uncharacterized protein {ECO:0000313|EMBL:AJF61775.1}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
rifoxya1_full_scaffold_2112_11
CG_Woesearch_03, Woesearchaeota, Archaea

Not on your lists

comp(8890..9192)
DNA (303bp) protein (101aa)
50S ribosomal protein L12 n=1 Tax=Methanobacterium sp. Maddingley MBC34 RepID=K6UAR0_9EURY
rpl12p; 50S ribosomal protein L12; K02869 large subunit ribosomal protein L12 Tax=CG_Woesearch_03
hypothetical protein
rifoxya1_full_scaffold_2112_12

Not on your lists


comp(9195..10010)
DNA (816bp) protein (272aa)
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00280}; Acidic ribosomal protein P0 homolog {ECO:0000256|HAMAP-Rule:MF_00280}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
Ribosomal protein L10
Ribosomal protein L10 alias=gwa2_scaffold_32_23 id=5039891 tax=GW2011_AR20 species=unknown genus=unknown taxon_order=Thermoplasmatales taxon_class=Thermoplasmata phylum=Euryarchaeota organism_desc=DELETE: see complete genome
DPANN Archaeon Jill Banfield (11/27/14)
rifoxya1_full_scaffold_2112_13

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comp(10007..10645)
DNA (639bp) protein (213aa)
Large subunit ribosomal protein L1 {ECO:0000313|EMBL:KHO45733.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
50S ribosomal protein L1 alias=gwa2_scaffold_2064_37 id=5047524 tax=GW2011_AR3 species=Methanothermococcus thermolithotrophicus genus=Methanothermococcus taxon_order=Methanococcales taxon_class=Methanococci phylum=Euryarchaeota organism_desc=gwa2_.43_13b
rpl1P; 50S ribosomal protein L1P
DPANN archaea? Jill Banfield (10/31/14)
rifoxya1_full_scaffold_2112_14
unknown

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10774..11304
DNA (531bp) protein (177aa)

This feature has no annotations

rifoxya1_full_scaffold_2112_15
Thermococcus litoralis, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists


comp(11307..12338)
DNA (1032bp) protein (344aa)
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Thermococcus litoralis DSM 5473 RepID=H3ZJP2_THELI
Protein kinase {ECO:0000313|EMBL:EHR79834.1}; TaxID=523849 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.;" source="Thermococcus litoralis (strain ATCC 51
protein kinase
rifoxya1_full_scaffold_2112_16
AR18, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(12341..12523)
DNA (183bp) protein (61aa)
30S ribosomal protein S27ae; K02977 small subunit ribosomal protein S27Ae Tax=AR18
30S ribosomal protein S27ae; K02977 small subunit ribosomal protein S27Ae alias=gwa2_scaffold_3934_72 id=5049718 tax=GW2011_AR18 species=unknown genus=Thermococcus taxon_order=Thermococcales taxon_class=Thermococci phylum=Euryarchaeota organism_desc=gwa2_.30_20c
SSU ribosomal protein S27Ae
rifoxya1_full_scaffold_2112_17
Thermoproteus uzoniensis, Thermoproteus, Thermoproteales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

comp(12525..12842)
DNA (318bp) protein (106aa)
30S ribosomal protein S24e n=1 Tax=Thermoproteus uzoniensis (strain 768-20) RepID=F2L3N9_THEU7
30S ribosomal protein S24e {ECO:0000256|HAMAP-Rule:MF_00545, ECO:0000256|RuleBase:RU004382}; TaxID=999630 species="Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Thermoproteu
30S ribosomal protein S24e
rifoxya1_full_scaffold_2112_18
CG_Micra_06, Micraarchaeota, Archaea

Not on your lists

comp(12844..13026)
DNA (183bp) protein (61aa)
DNA-directed RNA polymerase subunit E, RpoE2; K03050 DNA-directed RNA polymerase subunit E" [EC:2.7.7.6] Tax=CG_Micra_06
Transcription elongation factor Spt4 n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-C06 RepID=N6VNL3_9EURY
DNA-directed RNA polymerase, subunit E
rifoxya1_full_scaffold_2112_19
Thermoplasmatales archaeon SCGC AB-539-C06, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists


comp(13027..13614)
DNA (588bp) protein (196aa)
DNA-directed RNA polymerase subunit E n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-C06 RepID=N6VV26_9EURY
DNA-directed RNA polymerase subunit E {ECO:0000313|EMBL:ENO11844.1}; TaxID=1242690 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales.;" source="Thermoplasmatales archaeon SCGC AB-539-
DNA-directed RNA polymerase subunit E
rifoxya1_full_scaffold_2112_20
unknown

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13707..13889
DNA (183bp) protein (61aa)

This feature has no annotations

rifoxya1_full_scaffold_2112_21
unknown

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13882..14091
DNA (210bp) protein (70aa)

This feature has no annotations

rifoxya1_full_scaffold_2112_22
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(14088..14468)
DNA (381bp) protein (127aa)
Uncharacterized protein {ECO:0000313|EMBL:AIC16799.1}; TaxID=926571 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera v
rifoxya1_full_scaffold_2112_23
unknown

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14546..14938
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=planctomycete KSU-1 RepID=I3INE5_9PLAN Tax=AR20
hypothetical protein
Uncharacterized protein alias=gwa2_scaffold_111_154 id=5041589 tax=GW2011_AR20 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes organism_desc=DELETE: see complete genome
rifoxya1_full_scaffold_2112_24
unknown

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comp(14935..15612)
DNA (678bp) protein (226aa)

This feature has no annotations

rifoxya1_full_scaffold_2112_25

Not on your lists

comp(15675..16238)
DNA (564bp) protein (188aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO51092.1}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
DNA-binding protein
DNA-binding protein; K07572 putative nucleotide binding protein alias=gwa2_scaffold_1845_9 id=5047070 tax=GW2011_AR20 species=unknown genus=Pyrococcus taxon_order=Thermococcales taxon_class=Thermococci phylum=Euryarchaeota organism_desc=DELETE: see complete genome
Displaying 25 items

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