ggKbase home page

RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_574

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_574_1
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

135..341
DNA (207bp) protein (69aa)
Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_574_2
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

357..1085
DNA (729bp) protein (243aa)
atpB; F0F1-type ATP synthase subunit a; K02108 F-type H+-transporting ATPase subunit a [EC:3.6.3.14] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
ATP synthase subunit a n=1 Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AHM3_IGNAJ
ATP synthase F0, A subunit
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_574_3
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

1126..1341
DNA (216bp) protein (72aa)
atpE; ATP synthase subunit c; K02110 F-type H+-transporting ATPase subunit c [EC:3.6.3.14] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
ATP synthase subunit c n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0HZW2_CALAS
atpE; ATP synthase subunit c
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_574_4
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

1357..1857
DNA (501bp) protein (167aa)
ATP synthase F0 subunit B; K02109 F-type H+-transporting ATPase subunit b [EC:3.6.3.14] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
ATP synthase subunit b n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=ATPF_RUBXD
ATP synthase F0 subunit B
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_574_5
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

1838..2374
DNA (537bp) protein (179aa)
ATP synthase F1 subunit delta (EC:3.6.3.14); K02113 F-type H+-transporting ATPase subunit delta [EC:3.6.3.14] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
ATP synthase F1 subunit delta (EC:3.6.3.14)
ATP synthase subunit delta n=1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=ATPD_HALOH
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_574_6
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

2386..3903
DNA (1518bp) protein (506aa)
ATP synthase F1 subunit alpha (EC:3.6.3.14); K02111 F-type H+-transporting ATPase subunit alpha [EC:3.6.3.14] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
ATP synthase F1 subunit alpha (EC:3.6.3.14)
ATP synthase subunit alpha n=1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=ATPA_HALOH
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_574_7
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

3896..4747
DNA (852bp) protein (284aa)
ATP synthase F1 subunit gamma; K02115 F-type H+-transporting ATPase subunit gamma [EC:3.6.3.14] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
ATP synthase gamma chain n=1 Tax=Thalassobacter arenae DSM 19593 RepID=S9S3E0_9RHOB
ATP synthase F1 subunit gamma
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_574_8
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

4751..6142
DNA (1392bp) protein (464aa)
ATP synthase F1 subunit beta; K02112 F-type H+-transporting ATPase subunit beta [EC:3.6.3.14] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
ATP synthase subunit beta id=2172662 bin=GWE2_RBX1_39_32 species=Pelosinus fermentans genus=Pelosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
ATP synthase F1 subunit beta
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_574_9
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

6139..6423
DNA (285bp) protein (95aa)
atpC; ATP synthase F0F1 subunit epsilon (EC:3.6.3.14)
F0F1 ATP synthase subunit epsilon n=1 Tax=actinobacterium SCGC AAA027-J17 RepID=UPI00036E75E9
F0F1 ATP synthase subunit epsilon Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_574_10
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

6622..7710
DNA (1089bp) protein (363aa)
hypothetical protein; K01442 choloylglycine hydrolase [EC:3.5.1.24] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
hypothetical protein n=1 Tax=Legionella shakespearei RepID=UPI000370BDFE
choloylglycine hydrolase
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_574_11
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

8278..8901
DNA (624bp) protein (208aa)
Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_574_12
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

9068..9442
DNA (375bp) protein (125aa)
hypothetical protein n=1 Tax=zeta proteobacterium SCGC AB-602-C20 RepID=UPI0003711192
hypothetical protein Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
hypothetical protein
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_574_13
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

9667..11142
DNA (1476bp) protein (492aa)
Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PVB1_9BACT
hypothetical protein Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
hypothetical protein
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_574_14
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

11225..12679
DNA (1455bp) protein (485aa)
N-6 DNA methylase Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
Similar to type I restriction modification enzyme M chain id=4841185 bin=GWC2_Planctomycete_KSU_39_26 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Planctomycete_KSU_39_26 organism_group=Planctomycetes
N-6 DNA methylase
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_574_15
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

12676..13506
DNA (831bp) protein (277aa)
hypothetical protein Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
rfr:Rfer_3905 prophage antirepressor id=13061 bin=ACD18 species=ACD18 genus=ACD18 taxon_order=ACD18 taxon_class=ACD18 phylum=OD1 tax=ACD18 organism_group=OD1 (Parcubacteria) organism_desc= OD1
hypothetical protein
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_574_16
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

13529..14671
DNA (1143bp) protein (381aa)
hypothetical protein Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
hypothetical protein id=16482 bin=ACD1 species=ACD1 genus=ACD1 taxon_order=ACD1 taxon_class=ACD1 phylum=OD1-i tax=ACD1 organism_group=OD1-i organism_desc=OD1-i
hypothetical protein
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_574_17
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

14702..15559
DNA (858bp) protein (286aa)
hypothetical protein Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
Prophage antirepressor id=3744355 bin=GWF2_Planctomycete_41_51 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=GWF2_Planctomycete_41_51 organism_group=Planctomycetes organism_desc=a211
phage antirepressor protein
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_574_18
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

15689..18352
DNA (2664bp) protein (888aa)
hypothetical protein n=1 Tax=Flavobacterium sp. ACAM 123 RepID=UPI0002F3005C
hypothetical protein Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
hypothetical protein
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_574_19
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

18385..19599
DNA (1215bp) protein (405aa)
type I restriction-modification system subunit S; K01154 type I restriction enzyme, S subunit [EC:3.1.21.3] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
Type I restriction modification DNA specificity domain protein n=1 Tax=Clostridium difficile CD69 RepID=T3A0C6_CLODI
type I restriction-modification system subunit S
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_574_20
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

19621..20682
DNA (1062bp) protein (354aa)
toxin Fic n=1 Tax=Lysinibacillus boronitolerans RepID=UPI00031F4C29
hypothetical protein Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
toxin fic
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_574_21
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

20688..23021
DNA (2334bp) protein (778aa)
Type I site-specific deoxyribonuclease; K01153 type I restriction enzyme, R subunit [EC:3.1.21.3] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
Type I restriction system, subunit R id=3553617 bin=GWC1_CPR2_39_9 species=ACD28 genus=ACD28 taxon_order=ACD28 taxon_class=ACD28 phylum=PER tax=GWC1_CPR2_39_9 organism_group=CPR2 organism_desc=Good
Type I site-specific deoxyribonuclease
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_574_22
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

23187..24401
DNA (1215bp) protein (405aa)
short chain dehydrogenase/reductase, MupV family Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
Probable acrA1 protein id=2207383 bin=GWB2_Ignavibacteria_35_12 species=Polaribacter irgensii genus=Polaribacter taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good
hypothetical protein
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_574_23
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

24407..24829
DNA (423bp) protein (141aa)
Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_574_24
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

24979..26850
DNA (1872bp) protein (624aa)
putative histidine kinase (EC:2.7.13.3) Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
putative histidine kinase (EC:2.7.13.3)
Putative Histidine kinase, contains GAF domain n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBW7_9BACT
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_574_25
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(26831..27235)
DNA (405bp) protein (135aa)
HEPN domain protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRH4_9FIRM
HEPN domain-containing protein Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
HEPN domain-containing protein
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_574_26
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(27219..27533)
DNA (315bp) protein (105aa)
Putative uncharacterized protein n=1 Tax=uncultured archaeon RepID=D1JC50_9ARCH
DNA polymerase beta domain-containing protein Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
DNA polymerase beta domain-containing protein
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_574_27
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(27582..28130)
DNA (549bp) protein (183aa)
Acetoacetate metabolism regulatory protein atoC n=1 Tax=uncultured Desulfobacterium sp. RepID=E1YLR0_9DELT
Fis family transcriptional regulator Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
Fis family transcriptional regulator
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_574_28
R_OD1_Jorgensenbacteria_45_20, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

28389..28586
DNA (198bp) protein (66aa)
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_OD1_Jorgensenbacteria_45_20_curated
Displaying 28 items

View Taxonomy