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RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_411

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Displaying items 1-30 of 43 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_411_1
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

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108..1121
DNA (1014bp) protein (338aa)
filamentation induced by cAMP protein Fic Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
type IV pilus biogenesis protein PilC; K02653 type IV pilus assembly protein PilC id=15194526 bin=GWC2_NOV_55_46 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_NOV_55_46 organism_group=Proteobacteria
filamentation induced by cAMP protein Fic
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_411_2
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

1612..3033
DNA (1422bp) protein (474aa)
Putative aminotransferase (ISS); K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
branched-chain amino acid aminotransferase (EC:2.6.1.42)
Branched-chain-amino-acid aminotransferase n=1 Tax=Ostreococcus tauri RepID=Q01AA4_OSTTA
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_411_3
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

3121..4077
DNA (957bp) protein (319aa)
thiamine-monophosphate kinase (EC:2.7.4.16); K00946 thiamine-monophosphate kinase [EC:2.7.4.16] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
thiamine-monophosphate kinase (EC:2.7.4.16)
Thiamine-monophosphate kinase id=1249777 bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_411_4
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

4067..5164
DNA (1098bp) protein (366aa)
hypothetical protein n=1 Tax=Orenia marismortui RepID=UPI00037F8A09
peptidase T-like protein Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
peptidase T-like protein
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_411_5
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

5146..5682
DNA (537bp) protein (179aa)
NUDIX hydrolase; K01515 ADP-ribose pyrophosphatase [EC:3.6.1.13] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
NUDIX hydrolase n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TR56_ALKMQ
NUDIX hydrolase
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_411_6
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

5683..6561
DNA (879bp) protein (293aa)
Tyrosine recombinase XerD n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HTQ3_9FIRM
XerD; site-specific recombinase XerD; K04763 integrase/recombinase XerD Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
XerD; site-specific recombinase XerD
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_411_7
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

6593..7219
DNA (627bp) protein (209aa)
peptidase M50 Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
hypothetical protein id=42983 bin=ACD38 species=ACD38 genus=ACD38 taxon_order=ACD38 taxon_class=ACD38 phylum=OP11 tax=ACD38 organism_group=OP11 (Microgenomates) organism_desc=OP11
peptidase M50
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_411_8
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

7223..8470
DNA (1248bp) protein (416aa)
bifunctional folylpolyglutamate synthase/dihydrofolate synthase; K11754 dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
FolC bifunctional protein n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S229_THEOJ
bifunctional folylpolyglutamate synthase/dihydrofolate synthase
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_411_9
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

8505..9074
DNA (570bp) protein (190aa)
cwlC1; sporulation-specific N-acetylmuramoyl-L-alanine amidase CwlC (EC:3.5.1.28) Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
cwlC1; sporulation-specific N-acetylmuramoyl-L-alanine amidase CwlC (EC:3.5.1.28)
Sporulation-specific N-acetylmuramoyl-L-alanine amidase CwlC n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0AYT4_CLOA9
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_411_10
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

9089..10138
DNA (1050bp) protein (350aa)
rod shape-determining protein MreB; K03569 rod shape-determining protein MreB and related proteins Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
Rod shape-determining protein MreB id=2009887 bin=GWE2_RBX1_39_32 species=Clostridium thermocellum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
rod shape-determining protein MreB
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_411_11
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

10135..10947
DNA (813bp) protein (271aa)
Cell shape-determining protein MreC n=1 Tax=delta proteobacterium NaphS2 RepID=D8FEY5_9DELT
rod shape-determining protein MreC; K03570 rod shape-determining protein MreC Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
mreC; rod shape-determining protein MreC
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_411_12
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

10973..11446
DNA (474bp) protein (158aa)
Uncharacterized protein n=6 Tax=Thermoanaerobacter RepID=B0K433_THEPX
rod shape-determining protein MreD; K03571 rod shape-determining protein MreD Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
hypothetical protein
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_411_13
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

11439..13247
DNA (1809bp) protein (603aa)
peptidoglycan glycosyltransferase (EC:2.4.1.129); K05515 penicillin-binding protein 2 Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
peptidoglycan glycosyltransferase (EC:2.4.1.129)
Peptidoglycan glycosyltransferase n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G5G3_GEOUR
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_411_14
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists


13313..14062
DNA (750bp) protein (250aa)
50S ribosomal protein L25 n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0LEI4_9BACT
ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; K02897 large subunit ribosomal protein L25 Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_411_15
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

14083..15330
DNA (1248bp) protein (416aa)
id=1959899 Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
id=1959899 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_411_16
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

15373..15762
DNA (390bp) protein (130aa)
flhb domain protein; K04061 flagellar biosynthesis protein Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
flagellar biosynthesis protein id=1959901 bin=GWE2_RBX1_39_32 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
flhb domain protein
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_411_17
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

15847..16584
DNA (738bp) protein (246aa)
Flagellar hook-basal body protein n=1 Tax=Desulfitobacterium metallireducens DSM 15288 RepID=G6GI59_9FIRM
flagellar basal-body rod protein FlgF Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
flagellar basal body rod protein FlgG
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_411_18
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

16600..17400
DNA (801bp) protein (267aa)
flgG; flagellar basal body rod protein FlgG; K02392 flagellar basal-body rod protein FlgG Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
Flagellar basal body rod protein FlgG id=3952835 bin=GWF2_OP9_related_35_9 species=Simiduia agarivorans genus=Simiduia taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_OP9_related_35_9 organism_group=OP9 (Atribacteria)
flgG; flagellar basal body rod protein FlgG
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_411_19
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

17397..18125
DNA (729bp) protein (243aa)
Putative flagellar basal body P-ring biosynthesis protein n=1 Tax=Oleispira antarctica RB-8 RepID=R4YSY9_OLEAN
flagellar basal body P-ring biosynthesis protein FlgA; K02386 flagella basal body P-ring formation protein FlgA Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
flagellar basal body P-ring biosynthesis protein FlgA
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_411_20
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

18122..18790
DNA (669bp) protein (223aa)
flagellar L-ring protein precursor (FlgH); K02393 flagellar L-ring protein precursor FlgH Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
Flagellar L-ring protein id=1959919 bin=GWE2_RBX1_39_32 species=Halobacteroides halobius genus=Halobacteroides taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
flagellar L-ring protein precursor (FlgH)
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_411_21
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

18790..20049
DNA (1260bp) protein (420aa)
flgI; flagellar basal body P-ring protein; K02394 flagellar P-ring protein precursor FlgI Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
Flagellar P-ring protein id=1817828 bin=GWD2_RBX1-related_39_127 species=Acetonema longum genus=Acetonema taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
flgI; flagellar basal body P-ring protein
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_411_22
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

20052..20399
DNA (348bp) protein (116aa)
Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_411_23
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

20396..21142
DNA (747bp) protein (249aa)
RNA polymerase sigma factor n=1 Tax=Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) RepID=F4LTR5_TEPAE
RNA polymerase sigma-28 subunit FliA/WhiG; K02405 RNA polymerase sigma factor for flagellar operon FliA Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
RNA polymerase sigma-28 subunit FliA/WhiG
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_411_24
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

21135..21446
DNA (312bp) protein (104aa)
id=4210415 Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
id=4210415 bin=GWF2_OP9_related_35_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP9_related_35_9 organism_group=OP9 (Atribacteria)
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_411_25
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

21452..21886
DNA (435bp) protein (145aa)
Flagellar basal body rod protein n=1 Tax=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) RepID=Q8R9Y6_THETN
FlgC; flagellar basal body rod protein; K02388 flagellar basal-body rod protein FlgC Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
FlgC; flagellar basal body rod protein
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_411_26
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

21900..22262
DNA (363bp) protein (121aa)
id=1959945 Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
id=1959945 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_411_27
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

22278..23783
DNA (1506bp) protein (502aa)
Flagellar M-ring protein n=1 Tax=Thermanaerovibrio acidaminovorans (strain ATCC 49978 / DSM 6589 / Su883) RepID=D1B6C7_THEAS
flagellar M-ring protein FliF; K02409 flagellar M-ring protein FliF Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
flagellar M-ring protein FliF
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_411_28
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

23803..24264
DNA (462bp) protein (154aa)
id=1959948 Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
id=1959948 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_411_29
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

24265..24999
DNA (735bp) protein (245aa)
fliH; flagellar assembly protein H; K02411 flagellar assembly protein FliH Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
flagellar biosynthesis/type III secretory pathway protein-like protein id=1817869 bin=GWD2_RBX1-related_39_127 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
fliH; flagellar assembly protein H
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_411_30
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

24989..26299
DNA (1311bp) protein (437aa)
ATPase, FliI/YscN family (EC:3.6.3.14); K02412 flagellum-specific ATP synthase [EC:3.6.3.14] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
ATPase, FliI/YscN family (EC:3.6.3.14)
ATPase, FliI/YscN family id=4510660 bin=GWF2_OP9-related_38_17 species=unknown genus=Selenomonas taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
Displaying items 1-30 of 43 in total

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