ggKbase home page

RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_346

Search features with annotation key words

Displaying items 1-30 of 56 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_346_1
unknown

Not on your lists

1..96
DNA (96bp) protein (32aa)

This feature has no annotations

RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_346_2
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

231..1580
DNA (1350bp) protein (450aa)
pyridoxal-phosphate dependent TrpB-like enzyme (EC:4.2.1.20); K06001 tryptophan synthase beta chain [EC:4.2.1.20] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
pyridoxal-phosphate dependent TrpB-like enzyme (EC:4.2.1.20)
Tryptophan synthase beta chain n=1 Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8A920_THEID
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_346_3
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(1614..1943)
DNA (330bp) protein (110aa)
hypothetical protein Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
hypothetical protein id=129679 bin=ACD7 species=ACD7 genus=ACD7 taxon_order=ACD7 taxon_class=ACD7 phylum=OD1-i tax=ACD7 organism_group=OD1-i organism_desc=OD1-i
hypothetical protein
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_346_4
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(1940..2281)
DNA (342bp) protein (114aa)
Putative uncharacterized protein n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MKK8_9BACT id=129684 bin=ACD7 species=Candidatus Poribacteria sp. WGA-A3 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=ACD7 organism_group=OD1-i organism_desc=OD1-i
hypothetical protein Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
hypothetical protein
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_346_5
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(2325..3623)
DNA (1299bp) protein (433aa)
radical SAM protein; K01012 biotin synthetase [EC:2.8.1.6] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
Similar to biotin synthase id=2433058 bin=GWF1_Spirochaetes_51_8 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF1_Spirochaetes_51_8 organism_group=Spirochaetes organism_desc=Novel clade
radical SAM protein
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_346_6
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(3626..3868)
DNA (243bp) protein (81aa)
hypothetical protein n=1 Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B4036D
hypothetical protein Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_346_7
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(3874..4191)
DNA (318bp) protein (106aa)
hypothetical protein Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
Putative uncharacterized protein id=4551636 bin=GWF2_Bacteroidetes_33_38 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF2_Bacteroidetes_33_38 organism_group=Bacteroidetes organism_desc=a699
hypothetical protein
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_346_8
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(4196..4573)
DNA (378bp) protein (126aa)
hypothetical protein Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
Nudix hydrolase id=2455096 bin=GWF1_Spirochaetes_51_8 species=Sulfurovum sp. AR genus=Sulfurovum taxon_order=unknown taxon_class=Epsilonproteobacteria phylum=Proteobacteria tax=GWF1_Spirochaetes_51_8 organism_group=Spirochaetes organism_desc=Novel clade
hypothetical protein
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_346_9
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(4577..5350)
DNA (774bp) protein (258aa)
Methyltransferase type 11 n=1 Tax=Methanobacterium sp. (strain AL-21) RepID=F0T6C2_METSL
type 11 methyltransferase Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
type 11 methyltransferase
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_346_10
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(5404..6627)
DNA (1224bp) protein (408aa)
PDZ/DHR/GLGF domain protein n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M8B9_GEODF
PDZ/DHR/GLGF domain-containing protein Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
PDZ/DHR/GLGF domain-containing protein
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_346_11
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(6721..6879)
DNA (159bp) protein (53aa)
Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_346_12
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(6901..7530)
DNA (630bp) protein (210aa)
seg 133..142 Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
seg 133..142 id=95759 bin=ACD63 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=ACD63 organism_group=OD1 (Parcubacteria) organism_desc=OD1
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_346_13
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(7534..7938)
DNA (405bp) protein (135aa)
id=4054962 Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
id=4054962 bin=GWF2_OP3_38_59 species=PER_GWF2_42_17 genus=PER_GWF2_42_17 taxon_order=PER_GWF2_42_17 taxon_class=PER_GWF2_42_17 phylum=PER tax=GWF2_OP3_38_59 organism_group=OP3 (Omnitrophica) organism_desc=a159
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_346_14
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(7935..8477)
DNA (543bp) protein (181aa)
ArsR-type transcriptional regulator, nucleotidyl transferase domain containing Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
Putative uncharacterized protein id=4054959 bin=GWF2_OP3_38_59 species=PER_GWF2_42_17 genus=PER_GWF2_42_17 taxon_order=PER_GWF2_42_17 taxon_class=PER_GWF2_42_17 phylum=PER tax=GWF2_OP3_38_59 organism_group=OP3 (Omnitrophica) organism_desc=a159
nucleotidyltransferase domain-containing protein
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_346_15
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(8523..9017)
DNA (495bp) protein (165aa)
Ni,Fe-hydrogenase maturation factor; K08315 hydrogenase 3 maturation protease [EC:3.4.23.51] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
hypothetical protein n=1 Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI00035EE39B
Ni,Fe-hydrogenase maturation factor
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_346_16
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(9011..9517)
DNA (507bp) protein (169aa)
hypothetical protein Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
Glr3535 protein id=4282168 bin=GWF2_OP3_43_52 species=Gloeobacter violaceus genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
hypothetical protein
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_346_17
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

9519..10664
DNA (1146bp) protein (382aa)
Fic family protein Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
Fic family protein id=1764443 bin=GWE2_RBX1_39_32 species=ACD7 genus=ACD7 taxon_order=ACD7 taxon_class=ACD7 phylum=OD1-i tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
Fic family protein
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_346_18
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

10967..12022
DNA (1056bp) protein (352aa)
hypothetical protein n=1 Tax=Hydrogenedentes bacterium JGI 0000039-J10 RepID=UPI00037637C8
hypothetical protein Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
hypothetical protein
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_346_19
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(12099..13427)
DNA (1329bp) protein (443aa)
hypothetical protein n=1 Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI000361E493
nickel-dependent hydrogenase Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
nickel-dependent hydrogenase
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_346_20
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(13424..14170)
DNA (747bp) protein (249aa)
F420-non-reducing hydrogenase vhu subunit G (EC:1.12.99.-) Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
F420-non-reducing hydrogenase vhu subunit G (EC:1.12.99.-)
cytochrome B n=1 Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI0003786DEF
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_346_21
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(14173..15009)
DNA (837bp) protein (279aa)
hypothetical protein n=1 Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI00037BEC6C
oxidoreductase Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
oxidoreductase
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_346_22
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(15012..16103)
DNA (1092bp) protein (364aa)
hypothetical protein n=1 Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI00036B915C
Ni/Fe hydrogenase subunit beta Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
Ni/Fe hydrogenase subunit beta
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_346_23
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(16127..16600)
DNA (474bp) protein (158aa)
Molybdenum cofactor synthesis domain protein n=1 Tax=Desulfitobacterium metallireducens DSM 15288 RepID=G6GDV9_9FIRM
mog; molybdopterin biosynthesis enzyme Mog Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
molybdenum cofactor biosynthesis protein MoaB
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_346_24
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(16597..17019)
DNA (423bp) protein (141aa)
Molybdenum cofactor synthesis domain protein n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S0D1_THEOJ
molybdenum cofactor synthesis domain-containing protein Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
molybdenum cofactor synthesis domain-containing protein
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_346_25
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(16992..17450)
DNA (459bp) protein (153aa)
molybdenum cofactor biosynthesis protein C; K03637 molybdenum cofactor biosynthesis protein C Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
Molybdenum cofactor biosynthesis protein C id=2330123 bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes
molybdenum cofactor biosynthesis protein C
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_346_26
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(17440..18240)
DNA (801bp) protein (267aa)
radical SAM protein; K03639 molybdenum cofactor biosynthesis protein Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
Radical SAM domain protein id=1950410 bin=GWD2_Bacteroidetes_33_33 species=Spirochaeta smaragdinae genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWD2_Bacteroidetes_33_33 organism_group=Bacteroidetes organism_desc=a152
molybdenum cofactor biosynthesis protein MoeA
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_346_27
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(18224..19393)
DNA (1170bp) protein (390aa)
molybdenum cofactor synthesis domain-containing protein; K03750 molybdopterin molybdotransferase [EC:2.10.1.1] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
Molybdenum cofactor synthesis domain protein id=2718485 bin=GWF2_Bacteroidetes_41_9 species=Spirochaeta smaragdinae genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF2_Bacteroidetes_41_9 organism_group=Bacteroidetes
molybdenum cofactor synthesis domain-containing protein
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_346_28
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(19390..20289)
DNA (900bp) protein (300aa)
ABC transporter-like protein; K06857 tungstate transport system ATP-binding protein Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
ABC transporter-like protein
Tungsten transporter ATP binding protein id=3757618 bin=GWF2_Syntrophobacterales_56_9 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_346_29
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(20286..20942)
DNA (657bp) protein (219aa)
tupB; tungstate ABC transporter permease; K05773 tungstate transport system permease protein Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
Binding-protein-dependent transport systems inner membrane component id=4359227 bin=GWC2_Geobacteraceae_55_20 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
tupB; tungstate ABC transporter permease
RIFOXYA2_FULL_CP_41_14_rifoxya2_full_scaffold_346_30
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(20932..21738)
DNA (807bp) protein (269aa)
ABC-type tungstate transport system, solute-binding protein n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LPG9_SYNAS
tungstate ABC transporter substrate-binding protein; K05772 tungstate transport system substrate-binding protein Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
tungstate ABC transporter substrate-binding protein
Displaying items 1-30 of 56 in total

View Taxonomy