ggKbase home page

RIFOXYA2_FULL_GWF2_Nitrospirae_44_9_rifoxya2_full_scaffold_124

Search features with annotation key words

Displaying items 1-30 of 95 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFOXYA2_FULL_GWF2_Nitrospirae_44_9_rifoxya2_full_scaffold_124_1
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

1..1200
DNA (1200bp) protein (400aa)
diguanylate cyclase Tax=GWF2_Nitrospirae_44_13_curated
Diguanylate cyclase id=4128081 bin=GWF2_Nitrospirae_44_13 species=Thioalkalivibrio thiocyanoxidans genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
diguanylate cyclase
RIFOXYA2_FULL_GWF2_Nitrospirae_44_9_rifoxya2_full_scaffold_124_2
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

1197..2225
DNA (1029bp) protein (343aa)
putative sensor histidine kinase with MCP region (EC:2.7.13.3) Tax=GWF2_Nitrospirae_44_13_curated
putative sensor histidine kinase with MCP region (EC:2.7.13.3)
Two-component sensor kinase id=4128077 bin=GWF2_Nitrospirae_44_13 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
RIFOXYA2_FULL_GWF2_Nitrospirae_44_9_rifoxya2_full_scaffold_124_3
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

2222..2680
DNA (459bp) protein (153aa)
Two-component response regulator id=4128075 bin=GWF2_Nitrospirae_44_13 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
response regulator receiver Tax=GWF2_Nitrospirae_44_13_curated
response regulator receiver
RIFOXYA2_FULL_GWF2_Nitrospirae_44_9_rifoxya2_full_scaffold_124_4
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

2680..3858
DNA (1179bp) protein (393aa)
Putative PAS/PAC sensor protein id=4128073 bin=GWF2_Nitrospirae_44_13 species=Methanobacterium sp. genus=Methanobacterium taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
putative PAS/PAC sensor protein Tax=GWF2_Nitrospirae_44_13_curated
Sensory transduction histidine kinase
RIFOXYA2_FULL_GWF2_Nitrospirae_44_9_rifoxya2_full_scaffold_124_5
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(3945..4379)
DNA (435bp) protein (145aa)
Tetratricopeptide TPR_2 repeat protein id=4128069 bin=GWF2_Nitrospirae_44_13 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypothetical protein Tax=GWF2_Nitrospirae_44_13_curated
hypothetical protein
RIFOXYA2_FULL_GWF2_Nitrospirae_44_9_rifoxya2_full_scaffold_124_6
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(4397..5965)
DNA (1569bp) protein (523aa)
alpha-isopropylmalate/homocitrate synthase family transferase; K01649 2-isopropylmalate synthase [EC:2.3.3.13] Tax=GWF2_Nitrospirae_44_13_curated
2-isopropylmalate synthase/homocitrate synthase family protein id=4128067 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
alpha-isopropylmalate/homocitrate synthase family transferase
RIFOXYA2_FULL_GWF2_Nitrospirae_44_9_rifoxya2_full_scaffold_124_7
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(6044..7303)
DNA (1260bp) protein (420aa)
ahcY; S-adenosyl-L-homocysteine hydrolase (EC:3.3.1.1); K01251 adenosylhomocysteinase [EC:3.3.1.1] Tax=GWF2_Nitrospirae_44_13_curated
ahcY; S-adenosyl-L-homocysteine hydrolase (EC:3.3.1.1)
Adenosylhomocysteinase id=4128065 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
RIFOXYA2_FULL_GWF2_Nitrospirae_44_9_rifoxya2_full_scaffold_124_8
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(7389..8540)
DNA (1152bp) protein (384aa)
metK; S-adenosylmethionine synthetase (EC:2.5.1.6); K00789 S-adenosylmethionine synthetase [EC:2.5.1.6] Tax=GWF2_Nitrospirae_44_13_curated
metK; S-adenosylmethionine synthetase (EC:2.5.1.6)
S-adenosylmethionine synthase id=4128062 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
RIFOXYA2_FULL_GWF2_Nitrospirae_44_9_rifoxya2_full_scaffold_124_9
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

8644..9546
DNA (903bp) protein (301aa)
High-affinity branched-chain amino acid ABC transporter (Permease protein) id=4128060 bin=GWF2_Nitrospirae_44_13 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
livH; high-affinity branched-chain amino acid ABC transporter permease Tax=GWF2_Nitrospirae_44_13_curated
livH; high-affinity branched-chain amino acid ABC transporter permease
RIFOXYA2_FULL_GWF2_Nitrospirae_44_9_rifoxya2_full_scaffold_124_10
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

9543..10727
DNA (1185bp) protein (395aa)
ABC tranpsorter, permease protein (N-ter) and ATP-binding protein (C-ter) putative branched-chain amino acid transport protein id=4128058 bin=GWF2_Nitrospirae_44_13 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
branched-chain amino acid ABC transporter permease/ATP-binding protein Tax=GWF2_Nitrospirae_44_13_curated
branched-chain amino acid ABC transporter permease/ATP-binding protein
RIFOXYA2_FULL_GWF2_Nitrospirae_44_9_rifoxya2_full_scaffold_124_11
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

10708..11469
DNA (762bp) protein (254aa)
monosaccharide-transporting ATPase (EC:3.6.3.17)
Monosaccharide-transporting ATPase id=4128056 bin=GWF2_Nitrospirae_44_13 species=Tepidanaerobacter acetatoxydans genus=Tepidanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
livG; leucine/isoleucine/valine transporter subunit ; ATP-binding component of ABC superfamily Tax=GWF2_Nitrospirae_44_13_curated
RIFOXYA2_FULL_GWF2_Nitrospirae_44_9_rifoxya2_full_scaffold_124_12
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

11557..12273
DNA (717bp) protein (239aa)
Putative Branched-chain amino acid ABC transporter, ATP-binding component id=4128054 bin=GWF2_Nitrospirae_44_13 species=Deinococcus deserti genus=Deinococcus taxon_order=Deinococcales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
branched-chain amino acid ABC transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein Tax=GWF2_Nitrospirae_44_13_curated
amino acid ABC transporter ATP-binding protein
RIFOXYA2_FULL_GWF2_Nitrospirae_44_9_rifoxya2_full_scaffold_124_13
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists


12548..12874
DNA (327bp) protein (109aa)
50S ribosomal protein L21 id=4128052 bin=GWF2_Nitrospirae_44_13 species=unknown genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
rplU; 50S ribosomal protein L21; K02888 large subunit ribosomal protein L21 Tax=GWF2_Nitrospirae_44_13_curated
rplU; 50S ribosomal protein L21
RIFOXYA2_FULL_GWF2_Nitrospirae_44_9_rifoxya2_full_scaffold_124_14
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists


12864..13148
DNA (285bp) protein (95aa)
50S ribosomal protein L27 id=4128050 bin=GWF2_Nitrospirae_44_13 species=unknown genus=unknown taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
50S ribosomal protein L25 Tax=GWF2_Nitrospirae_44_13_curated
50S ribosomal protein L25
RIFOXYA2_FULL_GWF2_Nitrospirae_44_9_rifoxya2_full_scaffold_124_15
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(13196..14065)
DNA (870bp) protein (290aa)
Putative uncharacterized protein id=4128048 bin=GWF2_Nitrospirae_44_13 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypothetical protein Tax=GWF2_Nitrospirae_44_13_curated
hypothetical protein
RIFOXYA2_FULL_GWF2_Nitrospirae_44_9_rifoxya2_full_scaffold_124_16
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

14111..14407
DNA (297bp) protein (99aa)
id=4128047 bin=GWF2_Nitrospirae_44_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
id=4128047 Tax=GWF2_Nitrospirae_44_13_curated
RIFOXYA2_FULL_GWF2_Nitrospirae_44_9_rifoxya2_full_scaffold_124_17
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(14462..14767)
DNA (306bp) protein (102aa)
Nucleic acid binding protein id=4128045 bin=GWF2_Nitrospirae_44_13 species=Thermoanaerobacterium xylanolyticum genus=Thermoanaerobacterium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
nucleic acid binding protein Tax=GWF2_Nitrospirae_44_13_curated
nucleic acid binding protein
RIFOXYA2_FULL_GWF2_Nitrospirae_44_9_rifoxya2_full_scaffold_124_18
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(14927..15202)
DNA (276bp) protein (92aa)
Uncharacterized protein id=4128043 bin=GWF2_Nitrospirae_44_13 species=Caloramator australicus genus=Caloramator taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
Uncharacterized protein Tax=GWF2_Nitrospirae_44_13_curated
RIFOXYA2_FULL_GWF2_Nitrospirae_44_9_rifoxya2_full_scaffold_124_19
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(15245..17986)
DNA (2742bp) protein (914aa)
peptidase families s8 and s53 domain-containing protein Tax=GWF2_Nitrospirae_44_13_curated
Peptidase families S8 and S53 domain protein id=4128042 bin=GWF2_Nitrospirae_44_13 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
peptidase families s8 and s53 domain-containing protein
RIFOXYA2_FULL_GWF2_Nitrospirae_44_9_rifoxya2_full_scaffold_124_20
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(17989..18921)
DNA (933bp) protein (311aa)
id=4128014 bin=GWF2_Nitrospirae_44_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
id=4128014 Tax=GWF2_Nitrospirae_44_13_curated
RIFOXYA2_FULL_GWF2_Nitrospirae_44_9_rifoxya2_full_scaffold_124_21
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(18934..19515)
DNA (582bp) protein (194aa)
Putative uncharacterized protein id=4128013 bin=GWF2_Nitrospirae_44_13 species=delta proteobacterium MLMS-1 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
Putative uncharacterized protein Tax=GWF2_Nitrospirae_44_13_curated
RIFOXYA2_FULL_GWF2_Nitrospirae_44_9_rifoxya2_full_scaffold_124_22
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(19543..20139)
DNA (597bp) protein (199aa)
Putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshD (Pilus type IV) id=4128012 bin=GWF2_Nitrospirae_44_13 species=Pseudoalteromonas haloplanktis genus=Pseudoalteromonas taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
mshD; mannose-sensitive agglutinin biogenesis protein MshD; K10927 MSHA pilin protein MshD Tax=GWF2_Nitrospirae_44_13_curated
mshD; mannose-sensitive agglutinin biogenesis protein MshD
RIFOXYA2_FULL_GWF2_Nitrospirae_44_9_rifoxya2_full_scaffold_124_23
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(20136..20786)
DNA (651bp) protein (217aa)
Type II secretion system minor pseudopilin GspH id=4128011 bin=GWF2_Nitrospirae_44_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
Type II secretion system minor pseudopilin GspH Tax=GWF2_Nitrospirae_44_13_curated
RIFOXYA2_FULL_GWF2_Nitrospirae_44_9_rifoxya2_full_scaffold_124_24
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(21085..21888)
DNA (804bp) protein (268aa)
Conserved protein id=4128010 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypothetical protein; K06990 Tax=GWF2_Nitrospirae_44_13_curated
hypothetical protein
RIFOXYA2_FULL_GWF2_Nitrospirae_44_9_rifoxya2_full_scaffold_124_25
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(21891..23261)
DNA (1371bp) protein (457aa)
dnaB; replicative DNA helicase (EC:3.6.1.-); K02314 replicative DNA helicase [EC:3.6.4.12] Tax=GWF2_Nitrospirae_44_13_curated
dnaB; replicative DNA helicase (EC:3.6.1.-)
Replicative DNA helicase id=4128009 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
RIFOXYA2_FULL_GWF2_Nitrospirae_44_9_rifoxya2_full_scaffold_124_26
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists


comp(23261..23704)
DNA (444bp) protein (148aa)
50S ribosomal protein L9 id=4128008 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
rplI; ribosomal protein L9; K02939 large subunit ribosomal protein L9 Tax=GWF2_Nitrospirae_44_13_curated
rplI; 50S ribosomal protein L9
RIFOXYA2_FULL_GWF2_Nitrospirae_44_9_rifoxya2_full_scaffold_124_27
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(23801..24643)
DNA (843bp) protein (281aa)
Metalloprotease id=4128007 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
metalloprotease Tax=GWF2_Nitrospirae_44_13_curated
metalloprotease
RIFOXYA2_FULL_GWF2_Nitrospirae_44_9_rifoxya2_full_scaffold_124_28
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(24845..26359)
DNA (1515bp) protein (505aa)
hypothetical protein; K14441 ribosomal protein S12 methylthiotransferase [EC:2.-.-.-] Tax=GWF2_Nitrospirae_44_13_curated
Ribosomal protein S12 methylthiotransferase RimO id=4128005 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypothetical protein
RIFOXYA2_FULL_GWF2_Nitrospirae_44_9_rifoxya2_full_scaffold_124_29
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(26349..26723)
DNA (375bp) protein (125aa)
Putative uncharacterized protein id=4128004 bin=GWF2_Nitrospirae_44_13 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypothetical protein; K09928 hypothetical protein Tax=GWF2_Nitrospirae_44_13_curated
hypothetical protein
RIFOXYA2_FULL_GWF2_Nitrospirae_44_9_rifoxya2_full_scaffold_124_30
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(26770..27852)
DNA (1083bp) protein (361aa)
thiL; thiamine-monophosphate kinase (EC:2.7.4.16); K00946 thiamine-monophosphate kinase [EC:2.7.4.16] Tax=GWF2_Nitrospirae_44_13_curated
thiL; thiamine-monophosphate kinase (EC:2.7.4.16)
Thiamine-monophosphate kinase id=4128003 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
Displaying items 1-30 of 95 in total

View Taxonomy