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rifoxyb1_full_scaffold_2927

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifoxyb1_full_scaffold_2927_1
CG_Pacearch_05, Pacearchaeota, Archaea

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comp(1..894)
DNA (894bp) protein (298aa)
Polysaccharide biosynthesis protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TRW4_METAC id=5103373 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
capsular polysaccharide biosynthesis protein Tax=CG_Pacearch_05
Polysaccharide biosynthesis protein
Polysaccharide biosynthesis protein
rifoxyb1_full_scaffold_2927_2

Not on your lists

993..2345
DNA (1353bp) protein (451aa)
Marine sediment metagenome DNA, contig: S12H4_S03015 {ECO:0000313|EMBL:GAJ01695.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
rifoxyb1_full_scaffold_2927_3

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2399..3121
DNA (723bp) protein (241aa)
cyj:Cyan7822_4440 family 2 glycosyl transferase id=138549 bin=ACD9 species=ACD9 genus=ACD9 taxon_order=ACD9 taxon_class=ACD9 phylum=OD1-i tax=ACD9 organism_group=OD1-i organism_desc=OD1-i
Uncharacterized protein {ECO:0000313|EMBL:EKE19391.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
glycosyl transferase family protein
glycosyl transferase family protein
rifoxyb1_full_scaffold_2927_4
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

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comp(3122..4507)
DNA (1386bp) protein (462aa)
radical SAM domain-containing protein (EC:1.14.13.81); K04035 magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase [EC:1.14.13.81] Tax=GWF2_Lentisphaerae_49_21_curated
radical SAM domain-containing protein (EC:1.14.13.81)
radical SAM domain-containing protein (EC:1.14.13.81)
Radical SAM domain protein id=4349814 bin=GWF2_Lentisphaerae_49_21 species=unknown genus=Staphylothermus taxon_order=Desulfurococcales taxon_class=Thermoprotei phylum=Crenarchaeota tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good + rbh
rifoxyb1_full_scaffold_2927_5

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comp(4784..6340)
DNA (1557bp) protein (519aa)
SecD/SecF/SecDF export membrane protein n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EEL5_9EURY id=5102895 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
SecD/SecF/SecDF export membrane protein {ECO:0000313|EMBL:KHO52336.1}; TaxID=1579372 species="Archaea.;" source="archaeon GW2011_AR13.;"
SecD/SecF/SecDF export membrane protein
SecD/SecF/SecDF export membrane protein
rifoxyb1_full_scaffold_2927_6

Not on your lists

comp(6313..7191)
DNA (879bp) protein (293aa)
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; TaxID=1579372 species="Archaea.;" source="archaeon GW2011_AR13.;"
preprotein translocase subunit SecF; K03074 preprotein translocase subunit SecF id=5045761 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Protein-export membrane protein SecF
Protein-export membrane protein SecF
rifoxyb1_full_scaffold_2927_7
RBG_13_Pacearchaeota_33_26_curated, Pacearchaeota, DPANN, Archaea

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7675..7956
DNA (282bp) protein (94aa)
Tax=RBG_13_Pacearchaeota_33_26_curated
rifoxyb1_full_scaffold_2927_8
RBG_13_Pacearchaeota_33_26_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(7948..8670)
DNA (723bp) protein (241aa)
DNA-directed RNA polymerase subunit D (EC:2.7.7.6); K03047 DNA-directed RNA polymerase subunit D [EC:2.7.7.6] Tax=RBG_13_Pacearchaeota_33_26_curated
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003621DCB
DNA-directed RNA polymerase subunit D
DNA-directed RNA polymerase subunit D
rifoxyb1_full_scaffold_2927_9
AR13, Pacearchaeaota, DPANN, Archaea

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comp(8705..9193)
DNA (489bp) protein (163aa)
40S ribosomal protein S14 n=1 Tax=Guillardia theta RepID=Q98S22_GUITH
30S ribosomal protein S11 Tax=AR13
rps11p; 30S ribosomal protein S11
rps11p; 30S ribosomal protein S11
rifoxyb1_full_scaffold_2927_10
CG_Pacearch_01, Pacearchaeota, Archaea

Not on your lists


comp(9186..9695)
DNA (510bp) protein (170aa)
30S ribosomal protein S4 n=1 Tax=Methanocaldococcus villosus KIN24-T80 RepID=N6VS30_9EURY
rps4p; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 Tax=CG_Pacearch_01
30S ribosomal protein S4
30S ribosomal protein S4
DPANN Jill Banfield (11/29/14)
rifoxyb1_full_scaffold_2927_11
RBG_13_Pacearchaeota_33_26_curated, Pacearchaeota, DPANN, Archaea

Not on your lists


comp(9698..10153)
DNA (456bp) protein (152aa)
30S ribosomal protein S13 n=1 Tax=Nanoarchaeum equitans (strain Kin4-M) RepID=RS13_NANEQ id=5103690 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
rps13p; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 Tax=RBG_13_Pacearchaeota_33_26_curated
30S ribosomal protein S13
30S ribosomal protein S13
rifoxyb1_full_scaffold_2927_12
RBG_16_Pacearchaeota_35_8_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(10167..10709)
DNA (543bp) protein (181aa)
DNA-binding protein n=3 Tax=Pyrococcus RepID=Q8TZW3_PYRFU id=5103692 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein; K07572 putative nucleotide binding protein Tax=RBG_16_Pacearchaeota_35_8_curated
DNA-binding protein
DNA-binding protein
rifoxyb1_full_scaffold_2927_13

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comp(10715..11020)
DNA (306bp) protein (102aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037E07C5
Uncharacterized protein {ECO:0000313|EMBL:KHO51449.1}; TaxID=1579372 species="Archaea.;" source="archaeon GW2011_AR13.;"
rifoxyb1_full_scaffold_2927_14

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comp(11021..11284)
DNA (264bp) protein (88aa)
50S ribosomal protein L21e n=1 Tax=Thermoplasmatales archaeon I-plasma RepID=T0LLE8_9EURY
Uncharacterized protein {ECO:0000313|EMBL:KHO51448.1}; TaxID=1579372 species="Archaea.;" source="archaeon GW2011_AR13.;"
50S ribosomal protein L21e
50S ribosomal protein L21e
rifoxyb1_full_scaffold_2927_15

Not on your lists

comp(11325..11522)
DNA (198bp) protein (66aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO51447.1}; TaxID=1579372 species="Archaea.;" source="archaeon GW2011_AR13.;"
rifoxyb1_full_scaffold_2927_16

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comp(11593..12801)
DNA (1209bp) protein (403aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO49496.1}; TaxID=1579368 species="Archaea.;" source="archaeon GW2011_AR6.;"
hypothetical protein; K02004 putative ABC transport system permease protein id=5046030 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
hypothetical protein
rifoxyb1_full_scaffold_2927_17
RBG_16_Pacearchaeota_35_8_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(12806..13684)
DNA (879bp) protein (293aa)
hypothetical protein
id=5103794 Tax=RBG_16_Pacearchaeota_35_8_curated
id=5103794 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
rifoxyb1_full_scaffold_2927_18
unknown

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comp(13681..13986)
DNA (306bp) protein (102aa)

This feature has no annotations

Displaying 18 items

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